Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58480 517 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT4G17180 371 / 5e-125 O-Glycosyl hydrolases family 17 protein (.1) AT4G31140 313 / 2e-102 O-Glycosyl hydrolases family 17 protein (.1) AT5G20870 300 / 7e-97 O-Glycosyl hydrolases family 17 protein (.1) AT3G24330 297 / 6e-96 O-Glycosyl hydrolases family 17 protein (.1) AT5G58090 293 / 2e-94 O-Glycosyl hydrolases family 17 protein (.1) AT2G19440 286 / 5e-92 O-Glycosyl hydrolases family 17 protein (.1) AT1G64760 285 / 2e-91 O-Glycosyl hydrolases family 17 protein (.1.2) AT3G04010 285 / 2e-91 O-Glycosyl hydrolases family 17 protein (.1) AT5G64790 274 / 3e-87 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042269 [exp] 813 / 0 AT5G58480 606 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10039095 [exp] 374 / 6e-126 AT4G17180 727 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10043075 [exp] 323 / 9e-106 AT5G20870 631 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10001183 [exp] 322 / 3e-105 AT5G20870 628 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10031098 [exp] 302 / 6e-98 AT1G64760 694 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10028104 [exp] 293 / 9e-95 AT5G58090 729 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10040579 [exp] 293 / 1e-94 AT5G58090 729 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10002633 [exp] 288 / 2e-92 AT1G64760 681 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10020261 [exp] 286 / 1e-91 AT1G64760 676 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G076500 [exp] 608 / 0 AT5G58480 630 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.016G002800 [exp] 358 / 6e-120 AT4G17180 704 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.006G002100 [exp] 357 / 2e-119 AT4G17180 711 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G150400 [exp] 298 / 2e-96 AT5G58090 735 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G000900 [exp] 298 / 3e-96 AT4G31140 667 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.019G032900 [exp] 297 / 5e-96 AT1G64760 698 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.006G080600 [exp] 297 / 5e-96 AT5G58090 739 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.006G280700 [exp] 296 / 3e-95 AT4G31140 676 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G072300 [exp] 294 / 1e-94 AT3G24330 647 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.007G078900 [exp] 293 / 2e-94 AT5G64790 528 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [flax] [poplar] PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10026387 pacid=23156579 polypeptide=Lus10026387 locus=Lus10026387.g ID=Lus10026387.BGIv1.0 annot-version=v1.0 ATGCATCCTCCGATTCTCAACTTCATCTTCCTCCTACTGGCCATTGCCGCCGCCACCATCTTCAATCGTGTCGAAGCAGTCGGTGTGAACTGGGGCACGA CGGCGTCCCAGCCCCTGCCGCCGCGGGGAGTGGTGGGGCCCTTGGCGTGCCAAGCCGTTGAGAGCTGGGTCCACGACAATGTCACCCGCTACTTCTCCGC CGGAAAATCAGGCGTCCGTATAGAGAGCATTGCTGTGGGAGATGAACCGTTTCACAAGATGTACGGGGAACAGTTCCATCCATACGTCATTGGAGCAGCT ATCAACGTTGAATTAGCCTTGGCGAAAGCAAACCTAGGGAGCGATATGAAAGTGGTGGTTCCTTGCAGTTCTGATTCCATTCAGTCAGAATCCGGGTTAC CCTCCAAGGGACATTTCAGGCCCGAGCTGAATAAAACGATGAGCGAGCTACTCTCGTTGCTCGACAAGCACCACTCACCGTTCTACGTGACCATCTCTCC CTTTGTTAGCTTCCAGCAGGACAAGAACACCTCGCTCGACTTTGCATTGTTCAAACAGGCTGCACGTCCTCGTAGCGACAGTCGCAGAACGTACAAGAAC AGCTTTGACATGAGCTATGATACTGTGGTGGCTGCATTGTCCGCTGCAGGGTTCCCCGGTATGGATATCGTCGTTGCGAAAGTAGGTTGGCCTACTGATG GATCACCCAATGCTACTTCGCAGACTGCTGAGGTGTTCATGAAGGGACTGATGGACCATCTACGAGGCAAGTCTGGTTCACCGCTCAGACCTAAAAGCCC TCCAGCAGAGACGTTTATATTCAGCCTTCTGGACGAGAACGAGAGAAGCATAGCGAGTGGGAATTTCGAGAGGCATTGGGGAGTGTTCACGTTCGATGGC CAGGCTAAATATCATGTTGACTTTGGGCAGTGGACTAAGGGTTTAGAAAATGCACAGAATGTTGGTTATCTTTCTCCTAAATGGTGCGTTGTGGATAACA ACAAGGACATGTCGAACGCCAGCTCGAGAGCGTTGGATGCATGTTCAGCTGCAGATTGCACTGCACTCTCGCCCGGTGGGTCGTGTTCCAATATCAGCTG GCCTGGGAACATAACGTACGCGTTTAACAGTTACTATCAGCAGCATGATCAGAGGCAAGGTAGCTGTGATTTCGGAGGGTTAGGATTGGTCACAACTGTT GATCCTTCCTATGGTACTTGCCGGTTCTCTGTTGAGCTCAACACTTCTGGAGCTGCTGGTTCCCTTCTCAGGATTTGCATTTTCTGGTGGTTGATTCCGT TAACCATGAACAACCACCTTATTCTCACGCTGGTATAA
AA sequence Show only first row Show all	>Lus10026387 pacid=23156579 polypeptide=Lus10026387 locus=Lus10026387.g ID=Lus10026387.BGIv1.0 annot-version=v1.0 MHPPILNFIFLLLAIAAATIFNRVEAVGVNWGTTASQPLPPRGVVGPLACQAVESWVHDNVTRYFSAGKSGVRIESIAVGDEPFHKMYGEQFHPYVIGAA INVELALAKANLGSDMKVVVPCSSDSIQSESGLPSKGHFRPELNKTMSELLSLLDKHHSPFYVTISPFVSFQQDKNTSLDFALFKQAARPRSDSRRTYKN SFDMSYDTVVAALSAAGFPGMDIVVAKVGWPTDGSPNATSQTAEVFMKGLMDHLRGKSGSPLRPKSPPAETFIFSLLDENERSIASGNFERHWGVFTFDG QAKYHVDFGQWTKGLENAQNVGYLSPKWCVVDNNKDMSNASSRALDACSAADCTALSPGGSCSNISWPGNITYAFNSYYQQHDQRQGSCDFGGLGLVTTV DPSYGTCRFSVELNTSGAAGSLLRICIFWWLIPLTMNNHLILTLV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58480			O-Glycosyl hydrolases family 1...		Lus10026387 [exp]	0	1
AT2G29210			splicing factor PWI domain-con...		Lus10004983 [exp]	5.5	0.8880
AT5G01420			Glutaredoxin family protein (....		Lus10028742 [exp]	6.0	0.9227
AT3G21060		RBL	RbBP5 LIKE, Transducin/WD40 re...		Lus10035969 [exp]	6.2	0.9163
AT2G44640			unknown protein		Lus10043347 [exp]	11.5	0.9026
AT5G58930			Protein of unknown function (D...		Lus10040700 [exp]	14.4	0.8927
AT5G25590			Protein of unknown function (D...		Lus10022116 [exp]	17.8	0.9135
AT5G37630		EMB2656	EMBRYO DEFECTIVE 2656, ARM rep...		Lus10020813 [exp]	20.3	0.9150
AT2G44190		EMB3116, EDE1, ...	QWRF domain containing 5, EMBR...		Lus10039129 [exp]	26.3	0.9129
AT3G52890		KIPK	KCBP-interacting protein kinas...		Lus10008634 [exp]	26.5	0.8665
AT5G01420			Glutaredoxin family protein (....		Lus10017547 [exp]	26.5	0.9012

Compare expression of checked genes

Lus10026387 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.