Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58470 189 / 6e-55 TAF15b TBP-associated factor 15B (.1.2) AT1G50300 60 / 2e-09 TAF15 TBP-associated factor 15 (.1) AT4G00830 44 / 0.0002 LIF2 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT5G16260 44 / 0.0003 ELF9 EARLY FLOWERING 9, RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT2G35410 42 / 0.0007 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042268 [exp] 331 / 8e-109 AT1G50300 220 / 8e-67 TBP-associated factor 15 (.1) Lus10012902 [exp] 64 / 9e-11 AT1G50300 388 / 4e-134 TBP-associated factor 15 (.1) Lus10030555 [exp] 63 / 3e-10 AT1G50300 393 / 8e-135 TBP-associated factor 15 (.1) Lus10005895 [exp] 41 / 0.001 AT5G02530 185 / 8e-58 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G281300 [exp] 213 / 6e-64 AT5G58470 198 / 1e-58 TBP-associated factor 15B (.1.2) Potri.009G076600 [exp] 192 / 7e-56 AT5G58470 199 / 4e-59 TBP-associated factor 15B (.1.2) Potri.010G170700 [exp] 60 / 1e-09 AT1G50300 320 / 2e-107 TBP-associated factor 15 (.1) Potri.008G085400 [exp] 56 / 2e-08 AT1G50300 339 / 6e-115 TBP-associated factor 15 (.1) Potri.010G179000 [exp] 45 / 0.0001 AT5G16260 533 / 0.0 EARLY FLOWERING 9, RNA binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026388 pacid=23156470 polypeptide=Lus10026388 locus=Lus10026388.g ID=Lus10026388.BGIv1.0 annot-version=v1.0 ATGTCCGGTACGTACGGCCAAAACGGCGAATCGGCCGCTCCGCCTTACTCTGGCGGTGGTGGATACGGCGGTGGAGGAGGCTACGGAGGCAGCGGCGGTG GAGGTGGAGGAGGAGGAGGCTACGGCGGCTATGGTGGAGACCGCGGAGGTCGCGGTGGCGATAGAGGAGGTGGTGGTGGATACGGCGGTGGATCCCAAAG TCGAGGTGGCGGTGGTGGTTATCAAGGAGGAGGAGATCGTAGCGGTAGAGGTGGTGGCCGCGGTAGTGGCAGAGATGGTGATTGGCTTTGTCCTAATCCT GGCTGTAGATGTATATTTTTTGCAATTGGATACTGTTCTAACTCGTGGAAGTCTGTGCCTTGCATACTTAGCTGTGGAAACTCGAACTTTGCAAGAAGAA CAGAGTGCAATAAGTGCAGCACGCCTTGTCCAACTGCTGCCAAAAGCGATCGCGGTGGTGAAAGCGGCAATGGTTACAATAGAGGAGGTGGCTATTCTGG TAGTCGAGGGAGTAGAGATGGAAGTTATGATGGCAATAGAAGTGGAAGTTACAGCAGTAGCGGTAGAGGTGGAGGTTACGACAGTAGAAGCGGAGGAGGA GGGGGTGGAAGTAGAGGTGGATCTTATGGTGGTAGTCAAGTAAGAGGAGATGATGATGCATATAATCAAGTGCCTCCACCTGCAGTTCCAGCTTATGGAA GTGCGGGAGGGAATTATGCTGCACCCCCCAACTCATATGGGGGCAATGCAATCCCGCCACCTACAAGCTATACTGGCGGCCCTGCATCGTACCCTCCATC CTATGGTGCCCCTGCAGGTGGATATGGTGAAGTTGCTGGTGGGCGAGGTGGTCCTTCAGGTGGGTATGGTGGTGGTGGATCAAAGAGTCAGGGAGGAGGG GGTTATGGTGCTAGTGCTGGCTCTGGTGATCCTCCGGCAGTTAAGCAATGTGATGAGAATTGTGATGACACCTGTGATAACTCTAGAATCTACATATCTA ATTTGCCTGCTGATGTGACTGTTGAAGAAATGCAAGAGCTGTTCGGTGGAATTGGAATGGTTGGAAAGATTAAGCAGAAGAGGGGCTACAAGGACCAATG GCCGTGGAACATTAAGATATACACAGATGAGAAGGGCAACAATAAAGGCGATGCAGTTTTGTCGTATGAGGATCCTTCTGCTGCTCATTCTGCCGGAGGC TTTTACAACAATTATGAGATGCGAGGTCAGAAAATTAGTGTTGTGATGGCAGAGAAGACAGCTTTAAGGACTCATGATGGAGGTGGCGGCAGAGGTGGCG GGAGAGGTGGTGGCCGTGGTGGTGGTGGTGGTGGATATGGTGGAGATCGGCGGAGGGATAACTATGGTTCTGGCCCTGACAGGAATCAGCATGGTGGAAA CCGCTCGAGGCCATACTGA
AA sequence Show only first row Show all	>Lus10026388 pacid=23156470 polypeptide=Lus10026388 locus=Lus10026388.g ID=Lus10026388.BGIv1.0 annot-version=v1.0 MSGTYGQNGESAAPPYSGGGGYGGGGGYGGSGGGGGGGGGYGGYGGDRGGRGGDRGGGGGYGGGSQSRGGGGGYQGGGDRSGRGGGRGSGRDGDWLCPNP GCRCIFFAIGYCSNSWKSVPCILSCGNSNFARRTECNKCSTPCPTAAKSDRGGESGNGYNRGGGYSGSRGSRDGSYDGNRSGSYSSSGRGGGYDSRSGGG GGGSRGGSYGGSQVRGDDDAYNQVPPPAVPAYGSAGGNYAAPPNSYGGNAIPPPTSYTGGPASYPPSYGAPAGGYGEVAGGRGGPSGGYGGGGSKSQGGG GYGASAGSGDPPAVKQCDENCDDTCDNSRIYISNLPADVTVEEMQELFGGIGMVGKIKQKRGYKDQWPWNIKIYTDEKGNNKGDAVLSYEDPSAAHSAGG FYNNYEMRGQKISVVMAEKTALRTHDGGGGRGGGRGGGRGGGGGGYGGDRRRDNYGSGPDRNQHGGNRSRPY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58470		TAF15b	TBP-associated factor 15B (.1....		Lus10026388 [exp]	0	1
AT1G65270			unknown protein		Lus10026847 [exp]	1.0	0.9081
AT1G30480		DRT111	DNA-DAMAGE-REPAIR/TOLERATION P...		Lus10023355 [exp]	4.0	0.8761
					Lus10007581 [exp]	4.2	0.8760
AT4G00390	GeBP		DNA-binding storekeeper protei...		Lus10028550 [exp]	5.3	0.8757
AT5G61030		GR-RBP3	glycine-rich RNA-binding prote...		Lus10021154 [exp]	5.5	0.8683
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10016921 [exp]	6.7	0.8627
AT5G45190			Cyclin family protein (.1.2)		Lus10038329 [exp]	7.0	0.8655
AT4G00390	GeBP		DNA-binding storekeeper protei...		Lus10018859 [exp]	17.7	0.8359
AT1G74250			DNAJ heat shock N-terminal dom...		Lus10034688 [exp]	19.0	0.8395
AT1G09700		DRB1, HYL1	HYPONASTIC LEAVES 1, DSRNA-BIN...		Lus10023248 [exp]	21.2	0.8467

Compare expression of checked genes

Lus10026388 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.