Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30120 157 / 1e-46 unknown protein AT3G14750 137 / 2e-38 unknown protein AT1G67170 115 / 4e-30 unknown protein AT1G55170 79 / 6e-17 unknown protein AT5G61920 64 / 6e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042267 [exp] 360 / 3e-125 AT2G30120 157 / 2e-45 unknown protein Lus10038143 [exp] 127 / 6e-35 AT3G14750 275 / 1e-91 unknown protein Lus10013698 [exp] 127 / 8e-35 AT3G14750 298 / 3e-100 unknown protein Lus10005563 [exp] 126 / 3e-34 AT3G14750 288 / 2e-96 unknown protein Lus10035371 [exp] 104 / 1e-26 AT1G67170 284 / 2e-95 unknown protein Lus10030976 [exp] 104 / 1e-25 AT1G67170 294 / 1e-96 unknown protein Lus10037647 [exp] 91 / 2e-21 AT1G55170 233 / 6e-76 unknown protein Lus10015629 [exp] 89 / 1e-20 AT1G55170 236 / 2e-77 unknown protein Lus10015628 [exp] 87 / 3e-20 AT1G55170 211 / 3e-68 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G281400 [exp] 185 / 2e-57 AT2G30120 161 / 4e-48 unknown protein Potri.009G076700 [exp] 180 / 3e-55 AT3G14750 173 / 8e-52 unknown protein Potri.001G382700 [exp] 140 / 7e-40 AT3G14750 297 / 6e-100 unknown protein Potri.017G109700 [exp] 119 / 9e-31 AT1G67170 282 / 3e-91 unknown protein Potri.003G037900 [exp] 100 / 8e-25 AT1G55170 259 / 2e-86 unknown protein Potri.006G178100 [exp] 94 / 2e-22 AT5G61920 155 / 3e-46 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026389 pacid=23156469 polypeptide=Lus10026389 locus=Lus10026389.g ID=Lus10026389.BGIv1.0 annot-version=v1.0 ATGTCGGAACGAAATTGCCAACGACGTCCTCTCTCTCCACGCTCCAAGGACGACCACCGCCGTTCGCGGGATCGCCACCCCCTCTCTTCCGCTGCCGCCT CCGACCGTCGACACACTTCAATCATCCTCGAGGACCGCATCGCCATTCAGCACCAAGAAATTCAGGCGCTGATCATCGAGAACGAGCGCCTGGCTGCTGC TCACGTCGCGCTGAAGCAGGACCTTGCCCTCGCGCAGCAGGACATCCGCCTCTTGGGGAAGGCAGCAGGCGAGGTCAAGGCCGAGCGGGACAACGAGGTG CGGGACGTCTTCGGGAGGTCACTGAAAATAGAAGCCGAGCTTCGCTCCAAGGATCAGATGACCGCCGAGCTGGCTCAGGTGAGGTCGGACTTGCCGAAGC TTGCGGCGGAGCGTATGGAGCTCGTGAAGGAGTTGGAAGCGGTAGGTGATGAGTTGATGAAGACCAAGAGAGATTCAGACCGTCTTCCCGAGATTAAAGC CGAGATTCAGAAGTTGCGGCAGGAGATTCAGAAAGGAAGGGCTGCGGTTGACTGTGAGAAGAAGACTCGTGTCAACAATCTTGAGCATGGTAAGACAATG GACAGAAATAAGGTTGTTTTAGCTGATGAGATAGAAAGACTCGAGGTTGAGCTAGCCAAAGCACAGAAACGAACAAGGCTAGCGGCAGCAGCAGCTTCTG CAGCTGGGACAGCAACAATGAATCCAGGTAAACATGCAGGTAACTGTCTTTCACAGGGTGCTTCTCCTTCAGATGTGCCTCTTCCATCATATATAATATA CTAA
AA sequence Show only first row Show all	>Lus10026389 pacid=23156469 polypeptide=Lus10026389 locus=Lus10026389.g ID=Lus10026389.BGIv1.0 annot-version=v1.0 MSERNCQRRPLSPRSKDDHRRSRDRHPLSSAAASDRRHTSIILEDRIAIQHQEIQALIIENERLAAAHVALKQDLALAQQDIRLLGKAAGEVKAERDNEV RDVFGRSLKIEAELRSKDQMTAELAQVRSDLPKLAAERMELVKELEAVGDELMKTKRDSDRLPEIKAEIQKLRQEIQKGRAAVDCEKKTRVNNLEHGKTM DRNKVVLADEIERLEVELAKAQKRTRLAAAAASAAGTATMNPGKHAGNCLSQGASPSDVPLPSYIIY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30120			unknown protein		Lus10026389 [exp]	0	1
AT1G06510			unknown protein		Lus10001505 [exp]	1.0	0.9112
AT1G79190			ARM repeat superfamily protein...		Lus10016753 [exp]	7.6	0.8898
AT3G09320			DHHC-type zinc finger family p...		Lus10010852 [exp]	7.7	0.8149
AT4G24200			Transcription elongation facto...		Lus10028515 [exp]	10.0	0.8444
AT2G19430		DWA1, AtTHO6	DWD (DDB1-binding WD40 protein...		Lus10027630 [exp]	10.5	0.8539
AT1G67170			unknown protein		Lus10030976 [exp]	12.4	0.8115
AT3G56830			Protein of unknown function (D...		Lus10030290 [exp]	18.0	0.8154
AT4G37480			Chaperone DnaJ-domain superfam...		Lus10011536 [exp]	18.7	0.8324
AT3G48470		EMB2423	embryo defective 2423 (.1)		Lus10001101 [exp]	19.4	0.8532
AT1G59650		CW14	Protein of unknown function (D...		Lus10039463 [exp]	24.5	0.8103

Compare expression of checked genes

Lus10026389 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.