Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19130 289 / 2e-90 S-locus lectin protein kinase family protein (.1) AT4G00340 220 / 5e-65 RLK4 receptor-like protein kinase 4 (.1) AT5G24080 201 / 3e-60 Protein kinase superfamily protein (.1) AT1G34300 205 / 2e-59 lectin protein kinase family protein (.1) AT4G32300 195 / 1e-55 SD2-5 S-domain-2 5 (.1) AT1G61360 190 / 3e-54 S-locus lectin protein kinase family protein (.1.2) AT1G11350 181 / 7e-51 SD1-13, RKS2, CBRLK1 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1) AT1G61380 181 / 1e-50 SD1-29 S-domain-1 29 (.1) AT1G61390 179 / 1e-50 S-locus lectin protein kinase family protein (.1.2) AT1G61550 180 / 2e-50 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042266 [exp] 591 / 0 AT2G19130 775 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10031596 [exp] 375 / 9e-125 AT2G19130 749 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033748 [exp] 362 / 5e-119 AT2G19130 711 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10029802 [exp] 288 / 3e-90 AT2G19130 729 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10039732 [exp] 267 / 1e-82 AT2G19130 647 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10039762 [exp] 251 / 1e-76 AT2G19130 621 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10028711 [exp] 201 / 2e-59 AT1G34300 704 / 0.0 lectin protein kinase family protein (.1) Lus10006052 [exp] 205 / 4e-59 AT1G34300 961 / 0.0 lectin protein kinase family protein (.1) Lus10002917 [exp] 202 / 2e-58 AT4G32300 950 / 0.0 S-domain-2 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G119200 [exp] 376 / 4e-124 AT2G19130 874 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.013G149500 [exp] 358 / 3e-117 AT2G19130 838 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.013G121000 [exp] 355 / 6e-116 AT2G19130 863 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.014G086900 [exp] 244 / 8e-74 AT4G00340 862 / 0.0 receptor-like protein kinase 4 (.1) Potri.019G086300 [exp] 216 / 3e-63 AT1G34300 847 / 0.0 lectin protein kinase family protein (.1) Potri.019G086200 [exp] 213 / 3e-62 AT1G34300 918 / 0.0 lectin protein kinase family protein (.1) Potri.013G115800 [exp] 209 / 5e-61 AT1G34300 858 / 0.0 lectin protein kinase family protein (.1) Potri.013G115700 [exp] 209 / 1e-60 AT1G34300 939 / 0.0 lectin protein kinase family protein (.1) Potri.019G086400 [exp] 206 / 1e-59 AT1G34300 904 / 0.0 lectin protein kinase family protein (.1) Potri.015G026300 [exp] 205 / 3e-59 AT5G24080 684 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain
Representative CDS sequence Show only first row Show all	>Lus10026390 pacid=23156379 polypeptide=Lus10026390 locus=Lus10026390.g ID=Lus10026390.BGIv1.0 annot-version=v1.0 ATGTTTTACCTTCTCATCCTCTTCAGTCTCCTCCATCTCCGATGCTTGAAAGGTTTCGTCCCAAAATCTGAGGCTGATTACCGCACAAACGTCTTCTACA GAGGTTGCAGGAGGCGAACCGGGCTCGAATGTGGCAAGAATTCGAGTCAGGTTGAAGACCGGTTCGTCGAAAATGGTGAAATGAAACTGCCTAGCGATCC GTTGATGATACAGTCAGGAAATGCAGAGGAATGTAAGGGGTTTTGCTTGAACACCTGTTCTTGCACTGCTTATTCTTATGGTGGGGATAATGGATGCTTG GTTTGGTTTGGGGAGCTTCTTAATTTGGAACAAGATGTGACTGATGGCAAGACAATCTTCATCAAGGTTTCACCTTTTGAACTGTCTAGCCCCAACAACC GCCGCAATGTTGTTCTAATTGCGGCTTTTGTTGGGTCTGTTACGGTACTTGGTACTGTTAGTGTACTGTTGTGTCTAATATCGAGAAGGAAGCGAACGAT GAAGTCTGCCGTTGAAGGTTCTCTAATGGCATTCAGCTACAGAGACTTACAGGCCGCGACGAAGAATTTTTCGGACAGACTAGGCGGAGGAGGGTTCGGT TCTGTTTATAGAGGAGTATTAATGAATTCGAACACTGTCGTGGCGGTGAAGAAGCTCGAAGGTGTGAGTCAAGGTGAAAAGCAATTCCGGTTGGAGGTAA GCACGATTGGGACAATCCAACATGTTAACCTTGTTCGCCTCGTCGGATTCTGCTCCGGAGGTGGTCATAACAAGTTGTTAGTCTACGAACACATGCCGAA TGGATATCTAGATTCTGTTCTTTTCCACGATCGCAATGGCGGTACTTCTTCTTCTTCTTCTGAGCTGTTAAGCTGGAAGACTAGGTACAGCATTGCCCTC GGGATAGCCAGAGGACTGATGTACCTACACGAGAAGTGTCGAGATTGCATCATCCACTGCGACATCAAACCCGAGAACATCTTACTAGACACAAACAAGT CCCCAAAAGTGGCTGATTTCGGGTTAGCCAAGCTAGTGGGGAGGAATTTCAGTAGGGTGTTGACTACCATGAGAGGCACCAGAGGTACCTAG
AA sequence Show only first row Show all	>Lus10026390 pacid=23156379 polypeptide=Lus10026390 locus=Lus10026390.g ID=Lus10026390.BGIv1.0 annot-version=v1.0 MFYLLILFSLLHLRCLKGFVPKSEADYRTNVFYRGCRRRTGLECGKNSSQVEDRFVENGEMKLPSDPLMIQSGNAEECKGFCLNTCSCTAYSYGGDNGCL VWFGELLNLEQDVTDGKTIFIKVSPFELSSPNNRRNVVLIAAFVGSVTVLGTVSVLLCLISRRKRTMKSAVEGSLMAFSYRDLQAATKNFSDRLGGGGFG SVYRGVLMNSNTVVAVKKLEGVSQGEKQFRLEVSTIGTIQHVNLVRLVGFCSGGGHNKLLVYEHMPNGYLDSVLFHDRNGGTSSSSSELLSWKTRYSIAL GIARGLMYLHEKCRDCIIHCDIKPENILLDTNKSPKVADFGLAKLVGRNFSRVLTTMRGTRGT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19130			S-locus lectin protein kinase ...		Lus10026390 [exp]	0	1
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10022756 [exp]	4.2	0.9704
AT3G07310			Protein of unknown function (D...		Lus10002342 [exp]	6.2	0.9683
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Lus10007511 [exp]	11.8	0.9676
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10017981 [exp]	12.6	0.9681
AT4G14480			Protein kinase superfamily pro...		Lus10041162 [exp]	17.3	0.9590
					Lus10027919 [exp]	17.3	0.9655
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Lus10011310 [exp]	17.7	0.9603
AT1G67070		PMI2, DIN9	PHOSPHOMANNOSE ISOMERASE 2, DA...		Lus10015062 [exp]	18.1	0.9639
AT5G15130	WRKY	ATWRKY72, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10037205 [exp]	18.5	0.9653
AT2G40600			appr-1-p processing enzyme fam...		Lus10029040 [exp]	20.7	0.9590

Compare expression of checked genes

Lus10026390 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.