Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30140 425 / 2e-146 UDP-Glycosyltransferase superfamily protein (.1.2) AT2G30150 421 / 4e-145 UDP-Glycosyltransferase superfamily protein (.1) AT2G36970 206 / 7e-61 UDP-Glycosyltransferase superfamily protein (.1) AT1G22360 204 / 2e-60 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT2G28080 204 / 2e-60 UDP-Glycosyltransferase superfamily protein (.1) AT1G22380 196 / 4e-57 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G78270 196 / 5e-57 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT1G22340 194 / 1e-56 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT1G22400 192 / 7e-56 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT4G15480 184 / 2e-52 UGT84A1 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042260 [exp] 426 / 1e-145 AT2G30140 410 / 3e-139 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10042261 [exp] 403 / 1e-137 AT2G30140 472 / 1e-164 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10042259 [exp] 390 / 1e-135 AT2G30140 166 / 9e-49 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10042262 [exp] 318 / 8e-105 AT2G30150 375 / 2e-127 UDP-Glycosyltransferase superfamily protein (.1) Lus10026393 [exp] 251 / 6e-81 AT2G30140 238 / 4e-76 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10024584 [exp] 209 / 3e-62 AT1G22400 570 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10032218 [exp] 207 / 2e-61 AT1G22380 564 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10010665 [exp] 204 / 3e-60 AT1G22400 516 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10021438 [exp] 200 / 1e-58 AT2G36970 534 / 0.0 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G282100 [exp] 617 / 0 AT2G30140 475 / 5e-166 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.009G077200 [exp] 497 / 2e-174 AT2G30140 478 / 6e-167 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.001G281900 [exp] 471 / 2e-164 AT2G30140 478 / 6e-167 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.001G281800 [exp] 456 / 1e-158 AT2G30150 467 / 5e-163 UDP-Glycosyltransferase superfamily protein (.1) Potri.009G077500 [exp] 429 / 8e-148 AT2G30140 450 / 5e-156 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.009G077400 [exp] 425 / 3e-146 AT2G30150 464 / 6e-162 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G313000 [exp] 218 / 2e-65 AT1G22360 564 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.006G023151 [exp] 214 / 6e-64 AT1G22400 521 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.016G021700 [exp] 210 / 1e-62 AT1G22400 524 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.005G073766 [exp] 209 / 2e-62 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10026394 pacid=23156400 polypeptide=Lus10026394 locus=Lus10026394.g ID=Lus10026394.BGIv1.0 annot-version=v1.0 ATGAAAACGAAGGCAGTATGTCATCTGGTGGCGATGCCGTTTCCAGGAAGAGGGCACATAAACCCCATGATGAATCTCTGCAAGTTACTGTCTTCTCGAA GAGCAGACCTCCTTATTACCTTCGTAATCACAGAGGAATGGTCGGGCTACATAGGATCAGAACCAAAGCCTGAGATTGTTCAGTTCAGAACCATACCTAA TGGAATCATCCCACCTGAGCGCCTTAAAGCTGCTGATTTCCTTGGATTCTACGAAGCAGTGATGACGAAAATGGAATCTCCATTTGAACAGCTACTTGAT CAGCTTCAGCCGCCGGTGACTGCCATCATCGGTGACATCGAAGTCCGGTGGGCTATTGGAGTTGGAACCAGGAGGAACATCCCGGTTGCCGCCTTCTGGA CCATGTCTGCTTCTTTCTTTTCGATGTTGTACCATCTTGATGTGTCTGCAAAAGCTCATAATTCATCACCAGAGGATCTTATAGATTGTGGGGATTTGTT GCCTGGTATTTCTACCTCACGAGTTTCTGAACTTAAGAAGCTCTTCCAGAAGAATGATCTCCGAGTACTGCAACTGGCCATAGAATGCGTTTCCAAGGTG ACAAAGGCACAGTATCTCCTCTTCACTTCCATCCACGAGCTTGAGGTCGAAACCATGGATTCTTTGTCCCAAACTTTCCCATTTCCAGTCTACCCGATCG GCCCAGCCATTCCATACTTGGAACTACTTCAAAACCCCACCTCAAGCAGCATCCACCAATGGCTGAACAACCAACCTACACGCTCTGTACTGTACATCTC ACTGGGGAGCTTCCTCTCTGTTTCCAGCACCCAAATGGACGAAATCCTCTCTGGTCTTCGATCCAGCGGAGTTCGGTTCCTGTGGGTGGCTCGAGGCGAA GCCACACGGCTGAGCCAGAAGATGATGAGCGGTGGTGACCAGAATGGGATGGTGGTGGCATGGTGTGATCAGTTGAAGGTGTTGAGCCACTGTTCAGTGG GAGGTTTCTGGAGTCACTGCGGTTGGAATTCGACGCTGGAATCATTCTTCTCTGGGGTTCCGATGCTGACATTCCCTCTGTTTCTGGATCAGGATTCCAA CAGCAAGCTGATTGTTGAAGAGTTGGGGGTCGGTTGGGAATTGGCGAAGGGAGATTATGACGAAAACATCAGAGCAGAAGAAATCGCTGAAATTGTCCAG AAGTTCATGAACGTCGAAAGCGAAGAGGTGGGACGAATGAGGAGAAGAGCAAGGGAGGTTGGAGATATCTGCAATGGAGTAACTAAAGATGGTGGTTCGT CTGTAAGCAACCTTGATGCATTTATTACTGGCATTTCACAAGCTGTGTAG
AA sequence Show only first row Show all	>Lus10026394 pacid=23156400 polypeptide=Lus10026394 locus=Lus10026394.g ID=Lus10026394.BGIv1.0 annot-version=v1.0 MKTKAVCHLVAMPFPGRGHINPMMNLCKLLSSRRADLLITFVITEEWSGYIGSEPKPEIVQFRTIPNGIIPPERLKAADFLGFYEAVMTKMESPFEQLLD QLQPPVTAIIGDIEVRWAIGVGTRRNIPVAAFWTMSASFFSMLYHLDVSAKAHNSSPEDLIDCGDLLPGISTSRVSELKKLFQKNDLRVLQLAIECVSKV TKAQYLLFTSIHELEVETMDSLSQTFPFPVYPIGPAIPYLELLQNPTSSSIHQWLNNQPTRSVLYISLGSFLSVSSTQMDEILSGLRSSGVRFLWVARGE ATRLSQKMMSGGDQNGMVVAWCDQLKVLSHCSVGGFWSHCGWNSTLESFFSGVPMLTFPLFLDQDSNSKLIVEELGVGWELAKGDYDENIRAEEIAEIVQ KFMNVESEEVGRMRRRAREVGDICNGVTKDGGSSVSNLDAFITGISQAV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30140			UDP-Glycosyltransferase superf...		Lus10026394 [exp]	0	1
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10013830 [exp]	2.4	0.9621
AT3G06810		IBR3	IBA-RESPONSE 3, acyl-CoA dehyd...		Lus10020908 [exp]	4.0	0.9540
AT4G28400			Protein phosphatase 2C family ...		Lus10008556 [exp]	5.2	0.9459
AT4G39910		ATUBP3	ubiquitin-specific protease 3 ...		Lus10026041 [exp]	6.7	0.9378
AT1G06570		HPPD, HPD, PDS1	4-hydroxyphenylpyruvate dioxyg...		Lus10020740 [exp]	9.8	0.9395
AT3G15760			unknown protein		Lus10030098 [exp]	9.8	0.9414
AT1G14820			Sec14p-like phosphatidylinosit...		Lus10034577 [exp]	10.5	0.9399
AT5G41810			unknown protein		Lus10001907 [exp]	10.6	0.9415
AT5G43430		ETFBETA	electron transfer flavoprotein...		Lus10021198 [exp]	10.6	0.9379
AT1G23440			Peptidase C15, pyroglutamyl pe...		Lus10013026 [exp]	11.7	0.9421

Compare expression of checked genes

Lus10026394 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.