Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30160 465 / 5e-166 Mitochondrial substrate carrier family protein (.1) AT1G07030 463 / 4e-165 Mitochondrial substrate carrier family protein (.1) AT1G07025 134 / 4e-38 Mitochondrial substrate carrier family protein (.1) AT1G34065 134 / 3e-36 SAMC2 S-adenosylmethionine carrier 2 (.1) AT4G11440 131 / 6e-34 Mitochondrial substrate carrier family protein (.1) AT1G74240 124 / 2e-32 Mitochondrial substrate carrier family protein (.1) AT4G39460 119 / 9e-31 SAMC1, SAMT1 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) AT4G32400 110 / 4e-27 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) AT3G55640 107 / 3e-26 Mitochondrial substrate carrier family protein (.1) AT5G01500 100 / 1e-23 TAAC thylakoid ATP/ADP carrier (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042258 [exp] 627 / 0 AT2G30160 484 / 2e-173 Mitochondrial substrate carrier family protein (.1) Lus10029770 [exp] 120 / 6e-31 AT5G42130 478 / 5e-169 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1) Lus10005787 [exp] 117 / 3e-30 AT4G39460 494 / 2e-177 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Lus10006812 [exp] 116 / 1e-29 AT4G39460 478 / 6e-171 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Lus10017849 [exp] 115 / 2e-29 AT1G74240 430 / 6e-151 Mitochondrial substrate carrier family protein (.1) Lus10002026 [exp] 114 / 2e-28 AT4G32400 525 / 0.0 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Lus10002902 [exp] 111 / 2e-27 AT4G32400 522 / 0.0 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Lus10012597 [exp] 110 / 8e-27 AT5G15640 488 / 9e-173 Mitochondrial substrate carrier family protein (.1) Lus10004689 [exp] 107 / 3e-26 AT3G55640 482 / 1e-172 Mitochondrial substrate carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G077600 [exp] 501 / 4e-180 AT1G07030 425 / 4e-150 Mitochondrial substrate carrier family protein (.1) Potri.001G282400 [exp] 494 / 1e-177 AT1G07030 426 / 1e-150 Mitochondrial substrate carrier family protein (.1) Potri.016G125200 [exp] 464 / 1e-165 AT1G07030 436 / 1e-154 Mitochondrial substrate carrier family protein (.1) Potri.003G127600 [exp] 141 / 2e-37 AT4G11440 437 / 3e-146 Mitochondrial substrate carrier family protein (.1) Potri.005G085900 [exp] 128 / 2e-34 AT4G39460 487 / 9e-175 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Potri.005G197200 [exp] 126 / 1e-33 AT4G39460 417 / 3e-147 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Potri.004G117000 [exp] 115 / 2e-29 AT5G15640 434 / 1e-153 Mitochondrial substrate carrier family protein (.1) Potri.006G252100 [exp] 115 / 5e-29 AT4G32400 493 / 4e-175 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Potri.018G029200 [exp] 114 / 7e-29 AT4G32400 483 / 2e-171 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Potri.012G066000 [exp] 112 / 2e-28 AT1G74240 446 / 6e-158 Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10026395 pacid=23156550 polypeptide=Lus10026395 locus=Lus10026395.g ID=Lus10026395.BGIv1.0 annot-version=v1.0 ATGGCCACTGAAGCCACCACCGCCGCCGCCGAGTTCAAGAGCCCGGATTTCAGACCAGTTCCACAGCCACCGGATTTCCATCCAGAGATTATAGTGAAAT CCCACGACGGCCTCCACTTCTGGCAGTTCATGGTAGCCGGCTCCATCGCCGGAATGATCGAGCACATGGCCATGTTCCCAGTAGACACAATCAAGACACA TATGCAGGCAATCGGATCATGCCCGATCAAATCCGTAAGCATCTCTCACGCTTTGCGTTCCATTCTCCATACAGAAGGCGCATCGGGACTCTACCGGGGA ATTGCCGCGATGGGCCTCGGAGCCGGCCCCGCGCACGCCGTGTATTTCTCAATGTACGAGCTTTGTAAGAAGCGGTTCTCCGGTGATAATCCGAACAATT CGCTAGCTCATGCTGCTTCTGGAGTCTGCGCGACTATCTCCAGCGACGCCGTTTTCACTCCCATGGATATGGTGAAGCAGAGGCTGCAGCTTGGGAAGGA TAGTATGTATAGAGGGGTTTGGGATTGTGTGAAGAGGGTGTTTAAGGAAGAAGGTGTCGGTGCTTTCTATGCGTCGTATAAGACTACTATTTTGATGAAT GCTCCGTTTACTGCGGTTCATTTTGCGACGTATGAGGCTGTGAAGAAGGGTTTGGTGGAGGTTTCGCCGCAGAGTGCTGATGATGAGAGGTTGATTGTTC ATGCTACTGCTGGAGCTGCTGCTGGTGCGCTGGCGGCTGTTGTCACCACTCCGCTTGATGTGGTTAAGACCCAGTTGCAATGTCAGGGTGTCTGCGGGTG TGACAGATTCAAAAGCGGATCAATCAGCGATGTGTTGAAAACAATAGTTAAAAAGGACGGATACAGAGGCCTCCTCAGAGGTTGGGCTCCAAGGATGCTC TTCCATGCACCTGCAGCAGCCATTTGCTGGTCCACATATGAAGCCTCGAAGAACTTCTTTCAAGAACTCAATGACAACGGTAAGAGTGGTACTATCACCT GA
AA sequence Show only first row Show all	>Lus10026395 pacid=23156550 polypeptide=Lus10026395 locus=Lus10026395.g ID=Lus10026395.BGIv1.0 annot-version=v1.0 MATEATTAAAEFKSPDFRPVPQPPDFHPEIIVKSHDGLHFWQFMVAGSIAGMIEHMAMFPVDTIKTHMQAIGSCPIKSVSISHALRSILHTEGASGLYRG IAAMGLGAGPAHAVYFSMYELCKKRFSGDNPNNSLAHAASGVCATISSDAVFTPMDMVKQRLQLGKDSMYRGVWDCVKRVFKEEGVGAFYASYKTTILMN APFTAVHFATYEAVKKGLVEVSPQSADDERLIVHATAGAAAGALAAVVTTPLDVVKTQLQCQGVCGCDRFKSGSISDVLKTIVKKDGYRGLLRGWAPRML FHAPAAAICWSTYEASKNFFQELNDNGKSGTIT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30160			Mitochondrial substrate carrie...		Lus10026395 [exp]	0	1
AT5G65720		ATNIFS1, NIFS1 ...	NITROGEN FIXATION S HOMOLOG 1,...		Lus10011590 [exp]	14.5	0.7449
AT2G29900		PS2	Presenilin-2 (.1)		Lus10035137 [exp]	26.1	0.7367
AT3G17880		ATHIP2, ATTDX	HSC-70 INTERACTING PROTEIN, AR...		Lus10031334 [exp]	29.9	0.7372
AT3G51650			unknown protein		Lus10025247 [exp]	36.9	0.7214
AT2G37410		ATTIM17-2	TRANSLOCASE OF THE INNER MEMBR...		Lus10043029 [exp]	39.4	0.7250
AT5G16420			Pentatricopeptide repeat (PPR-...		Lus10030223 [exp]	40.0	0.7233
AT4G35540			zinc ion binding;transcription...		Lus10014847 [exp]	49.3	0.6961
AT5G10530			Concanavalin A-like lectin pro...		Lus10016833 [exp]	106.1	0.6766
AT1G21200	Trihelix		sequence-specific DNA binding ...		Lus10029777 [exp]	112.4	0.6712
AT5G21040		FBX2	F-box protein 2 (.1.2)		Lus10026770 [exp]	130.0	0.6495

Compare expression of checked genes

Lus10026395 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.