Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30200 574 / 0 EMB3147 EMBRYO DEFECTIVE 3147, catalytics;transferases;[acyl-carrier-protein] S-malonyltransferases;binding (.1), catalytics;transferases;[acyl-carrier-protein] S-malonyltransferases;binding (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042255 [exp] 703 / 0 AT2G30200 595 / 0.0 EMBRYO DEFECTIVE 3147, catalytics;transferases;[acyl-carrier-protein] S-malonyltransferases;binding (.1), catalytics;transferases;[acyl-carrier-protein] S-malonyltransferases;binding (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G077800 [exp] 619 / 0 AT2G30200 564 / 0.0 EMBRYO DEFECTIVE 3147, catalytics;transferases;[acyl-carrier-protein] S-malonyltransferases;binding (.1), catalytics;transferases;[acyl-carrier-protein] S-malonyltransferases;binding (.2) Potri.001G282600 [exp] 467 / 3e-166 AT2G30200 415 / 1e-145 EMBRYO DEFECTIVE 3147, catalytics;transferases;[acyl-carrier-protein] S-malonyltransferases;binding (.1), catalytics;transferases;[acyl-carrier-protein] S-malonyltransferases;binding (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0323 [flax] [poplar] Patatin PF00698 [flax] [poplar] Acyl_transf_1 Acyl transferase domain
Representative CDS sequence Show only first row Show all	>Lus10026397 pacid=23156483 polypeptide=Lus10026397 locus=Lus10026397.g ID=Lus10026397.BGIv1.0 annot-version=v1.0 ATGGCATCTTCTCTCGCTTTCCCTGCAATTTCATCCAGCCGCCTCTCCTTCGCTGCCTCCGACGGCTGCAGCCGAAATGGCGCTCGCGGATTTGGTGTCA AGAGCTTTGCACGGTCTAGGGTTTCCATGAGTGTTTCACTTGGATCGCAGACTGTTGTCGATGACTCCTTGTTCGCTGATTACAAGCCTACTACTGCCTT CTTGTTCCCTGGACAGGGAGCACAAGCTGTCGGAATGGGGAAGGAGGCTCAAAGCGTAGCTGCTGCTGCAGAGTTGTACAAGAAGGCAAATGATATACTA GGGTATGATCTTTTAGAACTCTGTCTCGCTGGGCCAAAAGAGAAACTTGACTCTACTGTTATAAGCCAGCCTGCTATTTATGTCACAAGTCTGGCTGCAG TTGAGATGCTCCGTGCTCGTGATGGAGGCCAGCAAATAATCGATTCCGTTGACGTCACGTGTGGTCTCAGCTTAGGTGAATATACTGCTCTGGCTTTTTC TGGAGCCTTCAGCTTTGAGGACGGTCTGAAGCTGGTCAAGCTAAGGGGTGAAGCCATGCAGGAAGCTTCTGATGCCGCGAAAAGTGCCATGGTCAGTATC ATAGGGCTGGACTCAGACAAAGTTCAGCAGTTATGTGATGCAGCGAATCAAGAAGTTGACGAGGCTGACAAAGTCCAGATCGCCAACTTCCTCTGTACTG GAAACTATGCTGTATCTGGAGGAGTAAAGGGAATTGAAGCAGTCGAAGCAAAGGCTAAATCATTCAAAGCGCGAATGACGGTGCGATTGGCTGTTGCCGG AGCTTTCCACACAAGTTTCATGGAACCAGCCGTCTCGAGATTAGAAGCTGCATTGGCAGCAACAGAGATAAGATCCCCGAGAATACCGGTCATATCAAAT GTCGATGCGCAACCACACGCAGATCCTGCCACGATTAAGAAGATCTTGGCGCGCCAGGTGACTTCCCCTGTTCAATGGGAAACCACAGTGAAGACTCTTC TAGGCAAAGGTCTGAAGAAGAGCTACGAGTTAGGACCCGGAAAGGTCATTGCTGGAATAGTGAAAAGGATGGACAGGGGTGCTGAGCTTGAGAACATCAG TGCCTGA
AA sequence Show only first row Show all	>Lus10026397 pacid=23156483 polypeptide=Lus10026397 locus=Lus10026397.g ID=Lus10026397.BGIv1.0 annot-version=v1.0 MASSLAFPAISSSRLSFAASDGCSRNGARGFGVKSFARSRVSMSVSLGSQTVVDDSLFADYKPTTAFLFPGQGAQAVGMGKEAQSVAAAAELYKKANDIL GYDLLELCLAGPKEKLDSTVISQPAIYVTSLAAVEMLRARDGGQQIIDSVDVTCGLSLGEYTALAFSGAFSFEDGLKLVKLRGEAMQEASDAAKSAMVSI IGLDSDKVQQLCDAANQEVDEADKVQIANFLCTGNYAVSGGVKGIEAVEAKAKSFKARMTVRLAVAGAFHTSFMEPAVSRLEAALAATEIRSPRIPVISN VDAQPHADPATIKKILARQVTSPVQWETTVKTLLGKGLKKSYELGPGKVIAGIVKRMDRGAELENISA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30200		EMB3147	EMBRYO DEFECTIVE 3147, catalyt...		Lus10026397 [exp]	0	1
AT3G25860		PLE2, LTA2	PLASTID E2 SUBUNIT OF PYRUVATE...		Lus10041467 [exp]	1.4	0.9391
AT3G16950		PTLPD1, LPD1	lipoamide dehydrogenase 1 (.1....		Lus10016877 [exp]	4.4	0.9055
AT4G32830		ATAUR1	ataurora1 (.1)		Lus10005487 [exp]	4.5	0.9399
AT2G05790			O-Glycosyl hydrolases family 1...		Lus10015151 [exp]	5.3	0.9233
AT3G03960			TCP-1/cpn60 chaperonin family ...		Lus10010670 [exp]	6.2	0.9383
AT1G77590		LACS9	long chain acyl-CoA synthetase...		Lus10042707 [exp]	6.7	0.9079
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Lus10040883 [exp]	7.7	0.9029
AT5G10270		CDKC;1	cyclin-dependent kinase C;1 (....		Lus10022043 [exp]	9.9	0.9120
AT2G28660			Chloroplast-targeted copper ch...		Lus10005875 [exp]	10.1	0.8929
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10017534 [exp]	10.5	0.9269

Compare expression of checked genes

Lus10026397 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.