Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58450 1003 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042248 [exp] 1658 / 0 AT5G58450 1272 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G152800 [exp] 1222 / 0 AT5G58450 1252 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09797 [flax] [poplar] NatB_MDM20 N-acetyltransferase B complex (NatB) non catalytic subunit
Representative CDS sequence Show only first row Show all	>Lus10026402 pacid=23156614 polypeptide=Lus10026402 locus=Lus10026402.g ID=Lus10026402.BGIv1.0 annot-version=v1.0 ATGGGAAAACCTGAGGAAGCTTTGTCCATCTGCTTAGAGGCAAAGGAGCTTTTGTACAAGAATGACTCTCTGTTGATGGATGATCTTACTCTCAGCACAC TTCAGATTGTTTTCCAACGGCTTGATCGTTTGGATTTGGCTACAAGCTGTTATGAGCATGCTTGCGGCAAATTTTCAAACAATTTGGAGCTGATGATGGG GCTTTTCAACTGCTATGTTCGTGAATATTCCTTTGTTAAACAGCAACAGACTGCAATTAAAATGTACAAGCTCGTCGGTGAAGAAAGGTTTTTGCTCTGG GCTATATGTAGCATCCAGTTACAGGTGTTTTGTGGAAATGGTGGAGAAAAGCTCTTATTATTGGCTGAAGGGTTACTTAAGAAGCACATTGCTTCTCACG GCTTGCATGAGCCCGAAGCTCTTATTGTCTACATCTCCATATTGGAGCAGCAAGCAAAATACGGTGATGCATTGGAACTTCTTTCTGGGAAATTGGGGTT GTTGCTAATGATTGAAGTTGATAAGCTACGGATACAGGGGAGGCTTCTTGCACATTCTGGTGACTATGCTTCTGCAGCAAATATATACCAGAAGATTTTA GAGATCTGCCCTGATGATTGGGAGGCTTTCCAACATTATCTAGGCTGCTTACTAGAGGATGACAGCAGCTGGAGGAATGGAGCTGATTCAGATTCAATCC ATCCTATTAAGCATGTTGATTGTAAAGTCTCACATTTGACAGATGATAAGTTTGAGTCTTGCATGGAAAACGCCTCAGCTTTGGCGCAAAAGTTACTAGT GGACACCAATGCTGAACCTATTAGAGGACCATACCTGGCAGCCCTTGAGATTAAAAGGAGGAAGCATGTATATGGCAAGGGAAGTGATGATGAGATCGTG GAGGCTCTAATTGAATATTATCTCAGGTTCGGTCACTTAGCCTGCTTCTCTTCTGATATTGTGGTGTTTGTTCAACTCTTGACTCCGGAAAAAAAGACGG AGTTTGTGGATAAGTTGGTGCAAAATTGCGACTCCATGACAGCAATTGGGACTAAAGTGCTTGGCCAATATACGACAATATTCAAGATCCGAGAGATGAT CGGAAACATGCACAAGCTTCCTGTTCTAGAACTTGAGAACTTTGTTGTCGACATGGTAAATATGTTCTGTAAAAGTCTTCCGCTATCTAAAGACTTGGAC CCACAAGAGAGTGTGCAAGGTGGAGAGCTTTTATGCATGGCAAGCAGTTTGCTAGTTCAGTTCAAGGTCTTGCTGGTGCATCTGTATTCCCACTTGGATG TTCTGTCGCTAGCTTATGAATGGTATAGAACCTTAGATGTGAAGAATATTTTGACAGAAACTATCTCACATCACATTTTACCTCAGATGCTGGTATCTCC ACTATGGGATGACCTAAAGAATCTACTAAAAGATTATCTCAGGTTCATGGATGACCACTTCAGGGAATCTGCCGATCTCACCTTTCTTGCATACCGCCAT AGAAACTACTCCAAAGTGATTGAGTTTGTACAATTCAAAGAACACCTACAACGATCAGATCAGTACTTAGTTGCGAAGGTTGAAACATCAATTTTACAGC TCAAGCAAAATGCAGATTGCATTGAAGAAGAGGAGAATGTTCTTGAAGGCCTGGATTTTGGGAATCATTTTGTTGAGCTCTCTAATGAAGTTGGGTCAAA ACCATTGACTTTCAACGAGGATCTCAGTTTGCGTCCTTGGTGGACTCCAACTTCAGAGAAAAACTATCTCTTAGGTCCTTTTGAAGGAATCGCTTATTAT CCTAAGAAGGAACTGGCAAAAGAAAGGGAAGAGAAAGTACGGAAAGTGATTGAAAAGAAGTCACTTCTTCCTCGTCTGATCTATCTTTCGGTCCAAAGTG CCTCTGCATTAAACAAAGACAATGCTGAGATGAATGGCTCTACATCTGATCCTAAAATCTCCAAGGAGTTCAAGTTTCTACTTGAACGGTATGCAAACCT GTTGGGATCTACACTAGATGATGCAATTAAAGTTATTTTGGGCGTCTCTACCGGTCAAAAGTCCTCGGAGGCATTTGGTTCAGATAGTTTGGAGTGGCTA AACTTCGCTGTGTTTTTAAATGCCTGGAATTTGAGTTCTCATGAACTCTCACATGCAGATGGCAGCAACATCGGTCATGGTATTCTTCACGTAGTAGACA CATTGCTGGTAAACCATGTTTCCGAAAAGATGAAACTAACAGGGTCGCTCGAGCTCTCTGGATGCCGGGACGTATCGACTTTAGTTCAACTGGTGACTGA ACCTTTGGCTTGGCATTGTCTCATCCTCCAATCTTGTGTTCGCTCCTCCATTCCATCCGGGAAGAAGAAGAAGAAAGGTGGACCCACCGACCATCCCAAC GCCCGATTATTGAACTCCCTTCGAGATTCAACCCAGTCTCTATATGGCATCATAGAAGAGGTAACCAAATGGCTGAGGAATCAGATTAACACACCTGAGC AAAACCAGATGGACTTGCTACTTTCTTCTATATTGAACAAAGGACAAGACTCAGGGCCCGGGCGTGCCTTCCAGGCTCTGGGAAGTTTAATACCGTCCCT CAACGAGGCTGATGTCGGCGAAAGGATCTACTGTGCAGTGAAGTCTTGGAGTGCTGTTGACGTTGCAAGGAAGGTAGTGACAGGAAATTCTGCGGTATTA TCCCGGTTCCTTGCAATATGCACGTCGAAGATGAAGTCGTTGCAGACTCTGACACAGAAGATCGCTCAAGTCTGA
AA sequence Show only first row Show all	>Lus10026402 pacid=23156614 polypeptide=Lus10026402 locus=Lus10026402.g ID=Lus10026402.BGIv1.0 annot-version=v1.0 MGKPEEALSICLEAKELLYKNDSLLMDDLTLSTLQIVFQRLDRLDLATSCYEHACGKFSNNLELMMGLFNCYVREYSFVKQQQTAIKMYKLVGEERFLLW AICSIQLQVFCGNGGEKLLLLAEGLLKKHIASHGLHEPEALIVYISILEQQAKYGDALELLSGKLGLLLMIEVDKLRIQGRLLAHSGDYASAANIYQKIL EICPDDWEAFQHYLGCLLEDDSSWRNGADSDSIHPIKHVDCKVSHLTDDKFESCMENASALAQKLLVDTNAEPIRGPYLAALEIKRRKHVYGKGSDDEIV EALIEYYLRFGHLACFSSDIVVFVQLLTPEKKTEFVDKLVQNCDSMTAIGTKVLGQYTTIFKIREMIGNMHKLPVLELENFVVDMVNMFCKSLPLSKDLD PQESVQGGELLCMASSLLVQFKVLLVHLYSHLDVLSLAYEWYRTLDVKNILTETISHHILPQMLVSPLWDDLKNLLKDYLRFMDDHFRESADLTFLAYRH RNYSKVIEFVQFKEHLQRSDQYLVAKVETSILQLKQNADCIEEEENVLEGLDFGNHFVELSNEVGSKPLTFNEDLSLRPWWTPTSEKNYLLGPFEGIAYY PKKELAKEREEKVRKVIEKKSLLPRLIYLSVQSASALNKDNAEMNGSTSDPKISKEFKFLLERYANLLGSTLDDAIKVILGVSTGQKSSEAFGSDSLEWL NFAVFLNAWNLSSHELSHADGSNIGHGILHVVDTLLVNHVSEKMKLTGSLELSGCRDVSTLVQLVTEPLAWHCLILQSCVRSSIPSGKKKKKGGPTDHPN ARLLNSLRDSTQSLYGIIEEVTKWLRNQINTPEQNQMDLLLSSILNKGQDSGPGRAFQALGSLIPSLNEADVGERIYCAVKSWSAVDVARKVVTGNSAVL SRFLAICTSKMKSLQTLTQKIAQV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58450			Tetratricopeptide repeat (TPR)...		Lus10026402 [exp]	0	1
AT2G17140			Pentatricopeptide repeat (PPR)...		Lus10026545 [exp]	1.0	0.9545
AT1G10270		GRP23	glutamine-rich protein 23 (.1)		Lus10024470 [exp]	2.6	0.9337
AT1G56570		PGN	PENTATRICOPEPTIDE REPEAT PROTE...		Lus10014027 [exp]	3.2	0.9257
AT2G34357			ARM repeat superfamily protein...		Lus10041233 [exp]	4.7	0.9428
AT4G32910			unknown protein		Lus10038723 [exp]	4.9	0.9289
AT1G63130			Tetratricopeptide repeat (TPR)...		Lus10029737 [exp]	5.1	0.9234
AT2G34357			ARM repeat superfamily protein...		Lus10041232 [exp]	6.0	0.9426
AT1G64790		ILA	ILITYHIA (.1.2)		Lus10003101 [exp]	7.2	0.9366
AT5G37570			Pentatricopeptide repeat (PPR-...		Lus10014212 [exp]	7.4	0.8961
AT2G31340		EMB1381	embryo defective 1381 (.1)		Lus10035336 [exp]	7.9	0.9093

Compare expression of checked genes

Lus10026402 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.