Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07120 726 / 0 SNX2b sorting nexin 2B (.1) AT5G58440 702 / 0 SNX2a sorting nexin 2A (.1) AT5G06140 108 / 4e-25 ATSNX1 ARABIDOPSIS THALIANA SORTING NEXIN 1, sorting nexin 1 (.1) AT5G37050 55 / 1e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042247 [exp] 946 / 0 AT5G07120 811 / 0.0 sorting nexin 2B (.1) Lus10016994 [exp] 96 / 8e-21 AT5G06140 650 / 0.0 ARABIDOPSIS THALIANA SORTING NEXIN 1, sorting nexin 1 (.1) Lus10014225 [exp] 88 / 4e-18 AT5G06140 645 / 0.0 ARABIDOPSIS THALIANA SORTING NEXIN 1, sorting nexin 1 (.1) Lus10021317 [exp] 78 / 4e-15 AT5G06140 523 / 0.0 ARABIDOPSIS THALIANA SORTING NEXIN 1, sorting nexin 1 (.1) Lus10025785 [exp] 44 / 0.0005 AT1G15240 953 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1.2.3) Lus10001495 [exp] 42 / 0.0008 AT4G32160 323 / 9e-107 Phox (PX) domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G124200 [exp] 710 / 0 AT5G07120 778 / 0.0 sorting nexin 2B (.1) Potri.016G076400 [exp] 99 / 4e-22 AT5G06140 664 / 0.0 ARABIDOPSIS THALIANA SORTING NEXIN 1, sorting nexin 1 (.1) Potri.006G209600 [exp] 96 / 5e-21 AT5G06140 635 / 0.0 ARABIDOPSIS THALIANA SORTING NEXIN 1, sorting nexin 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00787 [flax] [poplar] PX PX domain CL0145 [flax] [poplar] Golgi-transport PF09325 [flax] [poplar] Vps5 Vps5 C terminal like
Representative CDS sequence Show only first row Show all	>Lus10026403 pacid=23156490 polypeptide=Lus10026403 locus=Lus10026403.g ID=Lus10026403.BGIv1.0 annot-version=v1.0 ATGATGGGATCGGAGAACGAAGCAGAGTCTCAACTCTTCTCCTCCAGAGAAGAAATGGAAAATCTCGTCCTCGACGAACCGTCCGATAATCCCAACGGCA ACGGAAATGCGTCAAAATCTTTTGCCGATTACCGCAGCGCTATGTCCTCCGTCGTCGAGTCGCATCATCCTCTCTCCCCACGGTTGACGCCGGCCGATTC CGATCCCTTGCTTGCTCCTCAGCCTTACCGGGATCTCCGAAACCCTAGCTCATCGCACGATAGCGCTTCCTACATTGAGCCACCAGCTTACGCCGATGTG ATCTTCAGTCCGTTCGACGAGAGTTCAGGTAGCGAGATCAACGGTACAGACAGCCCTGGTAGATCGTTCGATTCTCTGCTGTCTCTCTCGAGATCCCCGT CCTCCAGCTCTGAGTACATCAAGATCACGGTCTCCAACCCACAGAAGGAGCAGGAGACATCGAATTCGCTAGTTCCGGGAGGTAATACCTATGTCACGTA TCTGATCACGACGAGGACGAACATCCAGGAGTTCAATGGATCGGAATTCAGCGTGAGGAGGCGATTCAAGGACGTGGTTACGTTGTCGGATCGGCTTGCG GAGGCTTATCGAGGGTTCTTCATCCCACCGAGACCGGACAAGAGTGTTGTAGAGGGCCAAGTGATGCAGAAGCAGGAGTTTGTAGAGCAGAGACGAGTTG CTTTGGAGAAGTACCTGAGGAGGCTCGTTGCTCATCCCATGATCAGGAACAGTGATGAATTGAAGGTGTTCTTGAAGGTGCAGGGGAAGTTGCCTTTGGC TACAAGCACTGATGTGGCTTCCAGGATGCTGGATGGAGCGGTGAAGCTACCGAAGCAGTTGTTTGGTGAGGGATCTGCAGTAGCCCCGCAAGACGTTGTT CAGCCAGCTAAAGGTGGGAGAGATTTGTTGAGGCTGTTTAAGGAACTGAAACAGTCAGTGGCTAATGACTGGGGTGGGTCGAGACCAGCTGTAGTGGAAG AAGATAAGGATTTTTTGGAGAAGAAGGAGAAAATGAATGAGTTTGAGCTTCAACTCAGCAATGCTTCTCAGCAGGCTGAGTCTCTTGTGAAAGCACAGCA AGATATGGGGGAGACAATGGGAGAATTGGGGTTAGCATTCATTAAATTAACCAAGTTTGAGAACGAGGAAGCTATGTTCAACTCGCAACGAGTAAGAGCA GGTGACATGAAGAATGTAGCTACTGCTGCAGTCAAAGCAAGCAGATTCTACAGGGAACTGAACGCTCAGACTGTTAAGCATTTGGATACCATTCATGAGT ATCTTGGGTTGATGCTATCTGTTCACAGTGCATTTGCGGATCGCTCTAGTGCTTTGTTGACAGTGCAAACTCTCCTATCAGAATTGTCGAATCTGCATTC AAGGGCTGAAAAACTTGAAGCTGCTTCCTCAAAAATATTTGGCGGTGACAAGTCAAGGATTCGTAGGATAGAGGAGTTGAAAGAAACCATAAGACTCACC GAAGATGCTAAAAGTGTCGCAGTAAGAGAATATGAACGGATAAAGTCTCTACAAAATCTTATTAATGAATTCCCTGGTAGAAATAGGACTGTTATCCAAA GAGCTCTTACCAATTTAGCTCCATATCTTGACTCAATCTGTGTGAAATACCATACGATTTTGAAGAAGTTAAAGACTCTCATGGGATGTAAAGGTTTATT TGAGCAGCAATATTTTGTGGACTGCATTCAGTTGCTTCTTTTGCAGCATCTGTTGGAAAATAACAGGACGGAACTTGAAAGGATGGAAAGGGAAAAACAC TCTGATTTCCTGAACATGTTGAAGGGATTTGTGCTTAATCAGGTTGGATACGCGGAGAAGATTGCCAACGTTTGGGGGAAAGTGGCGGAGGAGACTAGTG GGTATGCAACTGAGCGCAGTTGA
AA sequence Show only first row Show all	>Lus10026403 pacid=23156490 polypeptide=Lus10026403 locus=Lus10026403.g ID=Lus10026403.BGIv1.0 annot-version=v1.0 MMGSENEAESQLFSSREEMENLVLDEPSDNPNGNGNASKSFADYRSAMSSVVESHHPLSPRLTPADSDPLLAPQPYRDLRNPSSSHDSASYIEPPAYADV IFSPFDESSGSEINGTDSPGRSFDSLLSLSRSPSSSSEYIKITVSNPQKEQETSNSLVPGGNTYVTYLITTRTNIQEFNGSEFSVRRRFKDVVTLSDRLA EAYRGFFIPPRPDKSVVEGQVMQKQEFVEQRRVALEKYLRRLVAHPMIRNSDELKVFLKVQGKLPLATSTDVASRMLDGAVKLPKQLFGEGSAVAPQDVV QPAKGGRDLLRLFKELKQSVANDWGGSRPAVVEEDKDFLEKKEKMNEFELQLSNASQQAESLVKAQQDMGETMGELGLAFIKLTKFENEEAMFNSQRVRA GDMKNVATAAVKASRFYRELNAQTVKHLDTIHEYLGLMLSVHSAFADRSSALLTVQTLLSELSNLHSRAEKLEAASSKIFGGDKSRIRRIEELKETIRLT EDAKSVAVREYERIKSLQNLINEFPGRNRTVIQRALTNLAPYLDSICVKYHTILKKLKTLMGCKGLFEQQYFVDCIQLLLLQHLLENNRTELERMEREKH SDFLNMLKGFVLNQVGYAEKIANVWGKVAEETSGYATERS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07120		SNX2b	sorting nexin 2B (.1)		Lus10026403 [exp]	0	1
AT1G11190		ENDO1, BFN1	ENDONUCLEASE 1, bifunctional n...		Lus10018452 [exp]	2.0	0.8493
AT5G19070			SNARE associated Golgi protein...		Lus10034028 [exp]	2.8	0.8526
AT5G53330			Ubiquitin-associated/translati...		Lus10014944 [exp]	3.9	0.8615
AT1G74740		CDPK1A, CPK30, ...	CALCIUM-DEPENDENT PROTEIN KINA...		Lus10008631 [exp]	3.9	0.8483
AT1G24350			Acid phosphatase/vanadium-depe...		Lus10036984 [exp]	4.2	0.8481
AT4G28880		CKL3	casein kinase I-like 3 (.1)		Lus10011113 [exp]	6.0	0.8495
AT3G56190		ASNAP, ALPHA-SN...	alpha-soluble NSF attachment p...		Lus10032835 [exp]	7.0	0.8388
AT5G58320			Kinase interacting (KIP1-like)...		Lus10034448 [exp]	8.2	0.7891
AT3G56190		ASNAP, ALPHA-SN...	alpha-soluble NSF attachment p...		Lus10002410 [exp]	8.5	0.8333
AT4G21540		SPHK1	sphingosine kinase 1 (.1.2.3)		Lus10018439 [exp]	11.5	0.8250

Compare expression of checked genes

Lus10026403 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.