Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56110 199 / 1e-64 PRA1.B1 prenylated RAB acceptor 1.B1 (.1.2) AT2G38360 196 / 2e-63 PRA1.B4 prenylated RAB acceptor 1.B4 (.1) AT5G01640 184 / 1e-58 PRA1.B5 prenylated RAB acceptor 1.B5 (.1) AT5G05380 182 / 5e-58 PRA1.B3 prenylated RAB acceptor 1.B3 (.1) AT5G07110 182 / 6e-58 PRA1.B6 prenylated RAB acceptor 1.B6 (.1) AT2G40380 176 / 8e-56 PRA1.B2 prenylated RAB acceptor 1.B2 (.1) AT4G00005 96 / 1e-25 PRA1 (Prenylated rab acceptor) family protein (.1) AT1G55190 93 / 2e-23 PRA7, PRA1.F2 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) AT1G04260 85 / 2e-20 PRA1.D, MPIP7, MPI7 PRENYLATED RAB ACCEPTOR 1.D, CAMV movement protein interacting protein 7 (.1) AT1G08770 84 / 9e-20 PRA1.E prenylated RAB acceptor 1.E (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042246 [exp] 293 / 2e-101 AT2G38360 250 / 4e-84 prenylated RAB acceptor 1.B4 (.1) Lus10012224 [exp] 204 / 2e-66 AT2G38360 310 / 3e-108 prenylated RAB acceptor 1.B4 (.1) Lus10002853 [exp] 200 / 1e-64 AT2G38360 305 / 4e-106 prenylated RAB acceptor 1.B4 (.1) Lus10017425 [exp] 187 / 1e-59 AT2G38360 281 / 9e-97 prenylated RAB acceptor 1.B4 (.1) Lus10007533 [exp] 185 / 3e-59 AT2G38360 281 / 6e-97 prenylated RAB acceptor 1.B4 (.1) Lus10009842 [exp] 185 / 5e-59 AT2G38360 278 / 1e-95 prenylated RAB acceptor 1.B4 (.1) Lus10022680 [exp] 155 / 4e-48 AT2G38360 232 / 1e-78 prenylated RAB acceptor 1.B4 (.1) Lus10014747 [exp] 103 / 3e-27 AT1G55190 147 / 9e-45 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Lus10034363 [exp] 102 / 9e-27 AT1G55190 197 / 1e-64 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G183300 [exp] 208 / 2e-68 AT3G56110 239 / 9e-81 prenylated RAB acceptor 1.B1 (.1.2) Potri.019G124100 [exp] 199 / 7e-65 AT5G05380 140 / 8e-42 prenylated RAB acceptor 1.B3 (.1) Potri.008G074000 [exp] 192 / 3e-62 AT3G56110 213 / 2e-70 prenylated RAB acceptor 1.B1 (.1.2) Potri.008G074033 [exp] 192 / 3e-62 AT3G56110 213 / 2e-70 prenylated RAB acceptor 1.B1 (.1.2) Potri.006G104400 [exp] 192 / 7e-62 AT2G38360 206 / 5e-67 prenylated RAB acceptor 1.B4 (.1) Potri.016G126400 [exp] 187 / 6e-60 AT2G38360 209 / 2e-68 prenylated RAB acceptor 1.B4 (.1) Potri.005G219100 [exp] 122 / 1e-34 AT1G55190 132 / 8e-39 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Potri.005G054700 [exp] 119 / 1e-33 AT1G08770 137 / 1e-40 prenylated RAB acceptor 1.E (.1) Potri.002G044000 [exp] 113 / 4e-31 AT1G55190 130 / 4e-38 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Potri.002G043800 [exp] 109 / 6e-30 AT1G55190 136 / 1e-40 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03208 [flax] [poplar] PRA1 PRA1 family protein
Representative CDS sequence Show only first row Show all	>Lus10026404 pacid=23156513 polypeptide=Lus10026404 locus=Lus10026404.g ID=Lus10026404.BGIv1.0 annot-version=v1.0 ATGACCTCGGCTCCTTCGATTCCGCTCTCCAGCCAAGATTCCGGCGCCGCTGCCTCCTCCTCCGCTGTACCTCCTTCAGTTGTCGCCGCGGTCCGCTCCT TCGTCGGCAGGCTCTACTCCTCAGTCAGCCAATCGCTGTCCAACCGCCGCCCATGGACGGAGCTCATCGACCGCTCTGCCTTCTCGAGGCCGGAATCTCT CTCCGACGCCACCACCAGGATACGCAAGAACTACTCCTACTTCCGCGTCAACTACACAACTCTGCTTGCGATCGTCCTCGCCGTCTCCCTAATCTCCCAT CCTTTCTCTCTCATCACGCTCCTCTCCCTGCTCGCGGCGTGGCTGTTCCTCTACTCGTTCCGGCCCTCGGATCAGCCGCTGGTGGTGATGGGCCGGACCT TCTCGGACCGGGAGACGCTCGGGATCTTGATGCTGGTGACCGTGGTGGTGATCTTCTTGACGAGCGTCGGATCGCTACTGATCTCGGCGACGATGGTTGG AGTCGCGATTGTTTGCGTCCACGGCGCGTTTAGAGATCCGGAGGATCTATTCATGGATGAGCAGGAAGGAGGTGGCGCTGGACTGTTCTCGTTCATCGGT GGATCGGCCACTGCCGCCGGGAGTAGCATGATGTCGCGCGTGTGA
AA sequence Show only first row Show all	>Lus10026404 pacid=23156513 polypeptide=Lus10026404 locus=Lus10026404.g ID=Lus10026404.BGIv1.0 annot-version=v1.0 MTSAPSIPLSSQDSGAAASSSAVPPSVVAAVRSFVGRLYSSVSQSLSNRRPWTELIDRSAFSRPESLSDATTRIRKNYSYFRVNYTTLLAIVLAVSLISH PFSLITLLSLLAAWLFLYSFRPSDQPLVVMGRTFSDRETLGILMLVTVVVIFLTSVGSLLISATMVGVAIVCVHGAFRDPEDLFMDEQEGGGAGLFSFIG GSATAAGSSMMSRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10026404 [exp]	0	1
AT5G40150			Peroxidase superfamily protein...		Lus10014517 [exp]	1.4	0.8974
AT5G07720			Galactosyl transferase GMA12/M...		Lus10000563 [exp]	2.8	0.8808
AT1G04980		ATPDI10, ATPDIL...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10031522 [exp]	4.5	0.8735
AT4G29870			Oligosaccharyltransferase comp...		Lus10003228 [exp]	5.1	0.8838
AT1G32860			Glycosyl hydrolase superfamily...		Lus10001660 [exp]	5.5	0.8607
AT1G14360		ATUTR3, UTR3	UDP-galactose transporter 3 (....		Lus10030495 [exp]	5.7	0.8692
AT3G44150			unknown protein		Lus10016181 [exp]	5.7	0.8809
AT4G25680			PPPDE putative thiol peptidase...		Lus10039275 [exp]	7.9	0.8668
AT5G40150			Peroxidase superfamily protein...		Lus10032170 [exp]	8.1	0.8517
AT4G28230			unknown protein		Lus10033724 [exp]	8.7	0.8440

Compare expression of checked genes

Lus10026404 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.