Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24560 279 / 7e-92 GDSL-like Lipase/Acylhydrolase family protein (.1) AT1G06990 278 / 3e-91 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G31540 276 / 8e-91 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G30310 274 / 5e-90 GDSL-like Lipase/Acylhydrolase family protein (.1) AT2G30220 274 / 6e-90 GDSL-like Lipase/Acylhydrolase family protein (.1) AT1G58430 270 / 2e-88 RXF26 GDSL-like Lipase/Acylhydrolase family protein (.1) AT2G40250 232 / 2e-73 SGNH hydrolase-type esterase superfamily protein (.1) AT5G45960 219 / 2e-68 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G20120 219 / 8e-68 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G42990 217 / 9e-68 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026406 [exp] 260 / 8e-84 AT1G06990 350 / 4e-119 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10017279 [exp] 220 / 1e-68 AT3G14820 370 / 1e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10013573 [exp] 218 / 4e-68 AT3G14820 367 / 2e-126 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034540 [exp] 216 / 3e-67 AT1G75900 456 / 2e-161 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003717 [exp] 216 / 3e-67 AT1G75900 458 / 3e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10029958 [exp] 215 / 6e-67 AT2G42990 448 / 1e-158 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034541 [exp] 212 / 1e-65 AT1G75880 379 / 7e-131 SGNH hydrolase-type esterase superfamily protein (.1.2) Lus10003719 [exp] 211 / 5e-65 AT1G75880 379 / 8e-131 SGNH hydrolase-type esterase superfamily protein (.1.2) Lus10015162 [exp] 209 / 2e-64 AT2G04570 482 / 5e-172 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G153000 [exp] 300 / 3e-100 AT2G30220 355 / 1e-121 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.008G076600 [exp] 258 / 1e-83 AT1G06990 353 / 4e-121 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G076700 [exp] 243 / 7e-78 AT1G06990 321 / 2e-108 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G242800 [exp] 221 / 3e-69 AT1G75900 419 / 6e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G205100 [exp] 218 / 2e-67 AT2G42990 492 / 2e-175 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G062000 [exp] 214 / 2e-66 AT5G45960 440 / 8e-155 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G061900 [exp] 212 / 1e-65 AT5G45960 405 / 4e-141 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G160200 [exp] 211 / 3e-65 AT2G42990 437 / 3e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G018800 [exp] 210 / 2e-64 AT1G75900 415 / 2e-144 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G219700 [exp] 209 / 2e-64 AT2G42990 439 / 1e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10026405 pacid=23156403 polypeptide=Lus10026405 locus=Lus10026405.g ID=Lus10026405.BGIv1.0 annot-version=v1.0 ATGACAAGCTTGTTCCTACCCCCAACGACCGCCGCCGCCGTCATCCTCATCATGACAACCGCCGCCGCTGCAGCGGCAACGTTACCTAACTTCACCGCCG TCATAGTGTTTGGCGACTCAACTATGGACACGGGGAACAACAAATACCTCACCGAGCCCTTCTTCAAGGCCGACCACCTGCCTTACGGAAAGCAATTCCC GACCGGAAAGCCCACTGGGAGATTCTCCAACGGGAAGCTCATTCCTGACTTCGTCGCCGATTTACTCGCCGTGAAGAAGACCATGCCGCCGTACATGGAC CCTAACCTATCGGACGATGAGATCAAGACGGGTGTGGTCTTCGCGTCGTCGGGAACCGGGTTCGACGAACTGACGGCGTTGACTGTTGGGGCGGTACCGA TGGGGAAGCAGGTGGAGATGTTTAGGGAGTACATCGGACGGCTGCGGGAAGTTTTCGGGGAGGAAGTGGCGGATCGGACGGTAGGTGAGGCTTTGGTCTT GGTCAGCTGTGGTTCCAATGATATGATAATTAGCTATTATGATTTGAGGATTAGGTGGCCGGAGTATGACGTGGATGGGTATCAGAATTATTTACTGGGG AAAGTGGAGACTTTTGTTAAGGAAATATACTCCCAGGGAGGTCGTACGATAGCGGTATATGGATTGCCACCAATTGGGTGTATTCCACTTCAAATGACAG CATCCTTAGAACTCGATCCACGTAATCGACAGTGCATCGGGTCACAAAATTCGGACTCGCAAACTTATAACTCAAAGCTTGAGACGTTGTTAACTCGACT GCAGGCTTCCCTCCCCGGTAGTAAGATCCTCTACGCAAATTTTTACGACCCGTTGCTGGACATAATCACCAATCCAAAGAATTACGGTGATATAAACAGT ACCTCGCTCCTTCCATTTTCGATGCGGAATAATAATATCCCGATCGACGGTCATATTCTGAAATTGTACAGGATTCGAGGAGACGGGGAAAGGTTGCTGC GGGAGTGGGCTAGTGGAGATGGAGAAGTTGTGCTTGCCATTGACTCCAACGTGCGGGGACAAAACATCAAAGTATGTGTTCTTCGATAG
AA sequence Show only first row Show all	>Lus10026405 pacid=23156403 polypeptide=Lus10026405 locus=Lus10026405.g ID=Lus10026405.BGIv1.0 annot-version=v1.0 MTSLFLPPTTAAAVILIMTTAAAAAATLPNFTAVIVFGDSTMDTGNNKYLTEPFFKADHLPYGKQFPTGKPTGRFSNGKLIPDFVADLLAVKKTMPPYMD PNLSDDEIKTGVVFASSGTGFDELTALTVGAVPMGKQVEMFREYIGRLREVFGEEVADRTVGEALVLVSCGSNDMIISYYDLRIRWPEYDVDGYQNYLLG KVETFVKEIYSQGGRTIAVYGLPPIGCIPLQMTASLELDPRNRQCIGSQNSDSQTYNSKLETLLTRLQASLPGSKILYANFYDPLLDIITNPKNYGDINS TSLLPFSMRNNNIPIDGHILKLYRIRGDGERLLREWASGDGEVVLAIDSNVRGQNIKVCVLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24560			GDSL-like Lipase/Acylhydrolase...		Lus10026405 [exp]	0	1
					Lus10031026 [exp]	4.9	0.9324
AT1G12110		CHL1-1, CHL1, B...	CHLORINA 1, ARABIDOPSIS THALIA...		Lus10032252 [exp]	5.4	0.9458
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10004705 [exp]	9.8	0.9286
AT2G23755			unknown protein		Lus10019660 [exp]	10.3	0.9340
AT1G27040			Major facilitator superfamily ...		Lus10006477 [exp]	11.0	0.9292
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Lus10017486 [exp]	13.7	0.9212
AT3G47570			Leucine-rich repeat protein ki...		Lus10037310 [exp]	13.8	0.9215
AT1G16310			Cation efflux family protein (...		Lus10001768 [exp]	18.3	0.9304
AT5G45290			RING/U-box superfamily protein...		Lus10016428 [exp]	20.8	0.9263
AT3G58360			TRAF-like family protein (.1)		Lus10012948 [exp]	21.9	0.9166

Compare expression of checked genes

Lus10026405 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.