Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06990 314 / 5e-105 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G30310 297 / 3e-98 GDSL-like Lipase/Acylhydrolase family protein (.1) AT2G24560 290 / 1e-95 GDSL-like Lipase/Acylhydrolase family protein (.1) AT2G30220 290 / 2e-95 GDSL-like Lipase/Acylhydrolase family protein (.1) AT2G31540 290 / 3e-95 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G45960 278 / 9e-91 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G58430 277 / 1e-90 RXF26 GDSL-like Lipase/Acylhydrolase family protein (.1) AT2G40250 244 / 1e-77 SGNH hydrolase-type esterase superfamily protein (.1) AT3G16370 236 / 1e-74 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G20132 234 / 2e-73 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042245 [exp] 340 / 3e-114 AT1G06990 217 / 7e-67 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10029958 [exp] 247 / 9e-79 AT2G42990 448 / 1e-158 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003717 [exp] 247 / 1e-78 AT1G75900 458 / 3e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10013572 [exp] 243 / 3e-77 AT1G75900 435 / 2e-153 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034540 [exp] 242 / 1e-76 AT1G75900 456 / 2e-161 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10017279 [exp] 233 / 2e-73 AT3G14820 370 / 1e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003719 [exp] 232 / 9e-73 AT1G75880 379 / 8e-131 SGNH hydrolase-type esterase superfamily protein (.1.2) Lus10034541 [exp] 229 / 8e-72 AT1G75880 379 / 7e-131 SGNH hydrolase-type esterase superfamily protein (.1.2) Lus10013573 [exp] 228 / 3e-71 AT3G14820 367 / 2e-126 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G153000 [exp] 345 / 4e-117 AT2G30220 355 / 1e-121 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.008G076600 [exp] 307 / 2e-102 AT1G06990 353 / 4e-121 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G076700 [exp] 281 / 3e-92 AT1G06990 321 / 2e-108 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G062000 [exp] 267 / 2e-86 AT5G45960 440 / 8e-155 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G061900 [exp] 255 / 1e-81 AT5G45960 405 / 4e-141 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G242800 [exp] 254 / 1e-81 AT1G75900 419 / 6e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G205100 [exp] 252 / 2e-80 AT2G42990 492 / 2e-175 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G018800 [exp] 248 / 1e-78 AT1G75900 415 / 2e-144 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G160200 [exp] 242 / 5e-77 AT2G42990 437 / 3e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G219700 [exp] 239 / 2e-75 AT2G42990 439 / 1e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10026406 pacid=23156434 polypeptide=Lus10026406 locus=Lus10026406.g ID=Lus10026406.BGIv1.0 annot-version=v1.0 ATGGGGAAATCCACTTTACTCCATCTAATAACCCTACTAATCCTCCTCCTCTCATTAAACCTCTCAACAACAACATGCAACCCATTATGGACGAGGAGGA GGAGGAACCAGTTCCCTCATTTCCGACCACTCATCCCTTTCCCACCCAACAACACACCACCCCCACCTCCGCTGCCACCTCCCCCGCCGCAATCTCCACC GCCAAATAACAACGAGATCTCAACCATCCTGATATTCGGGGACTCAACTGTCGACACGGGGAACAACAACTTCCTCTCGACCGTCTTCAAGTCAAACTTC CCTCCCTACGGCCAGGACTACCCCGGCCATGTGGCGACGGGACGCTTCTCGAACGGGAAGCTTGTCCCTGACTTCCTGGCGTCGATGCTGGGGATCAAGG ACTCGGTCCCGCCGTTCCTAGACCCGACCCTGGAGGCGCGAGACCTGATGAGTGGGGTCAGCTTCGCGTCTGCTGGGTCCGGGTACGACGAGCTGACCAC TGCGTTTACGAACGTGGTTCCGGTACTGAAGCAGGTTGACATGTTCAGGAGGTATATTGATAGGGTTAAGGTTGTGGTCGGGGAGGAGACGAAGGCGTTG GAGGTTGTGAATGCTGCGCTTGTGCTGGTGACGGCGGGGACTAATGATATGACTTTTAACTTTTATGACATTCCGTCGAGGAGGAGGGACTTTAATCTTA CTGGCTACCACCATTTCTTGCTCAACAATCTCCAGATCTTCCTCAAGGAGTTATACAGCTTAGGAGCTCGAAGAATGATAGTGACAGGGCTTCCACCAAT CGGATGCCTACCGATCCAAATGGCTTCAAGGAACTCTCCACGATCATCATCATCTTCTTCTTGCATCAAAAGTCAAAACTCAGACTCACTCTGCTACAAC GACAACCTTAAGAAGCTTTTGCCCGATCTACAAGCTCAGCTTCCTCAAAGCAAGCTCATCTATGGCGACATTTACCGCCCATTTTTCAACATGATTAAAT CCCCACAAAAATACGGTTTCGTGGACGTGAAGAAAGGTTGTTGTGGTTCAACGGGAAAGTCGACAGAAGCATCATCCATACTATGCAATCCAAGGACTCC GAGGTGCCACAATGTTTCGCAGTATTTTTTCTGGGATAGCATACATCCTTCCGAGAAAACGTATGAGCTCGCCTCTCGAAGGATTCATCGCGAACTTCTT CCGCGACTATTCAATTAA
AA sequence Show only first row Show all	>Lus10026406 pacid=23156434 polypeptide=Lus10026406 locus=Lus10026406.g ID=Lus10026406.BGIv1.0 annot-version=v1.0 MGKSTLLHLITLLILLLSLNLSTTTCNPLWTRRRRNQFPHFRPLIPFPPNNTPPPPPLPPPPPQSPPPNNNEISTILIFGDSTVDTGNNNFLSTVFKSNF PPYGQDYPGHVATGRFSNGKLVPDFLASMLGIKDSVPPFLDPTLEARDLMSGVSFASAGSGYDELTTAFTNVVPVLKQVDMFRRYIDRVKVVVGEETKAL EVVNAALVLVTAGTNDMTFNFYDIPSRRRDFNLTGYHHFLLNNLQIFLKELYSLGARRMIVTGLPPIGCLPIQMASRNSPRSSSSSSCIKSQNSDSLCYN DNLKKLLPDLQAQLPQSKLIYGDIYRPFFNMIKSPQKYGFVDVKKGCCGSTGKSTEASSILCNPRTPRCHNVSQYFFWDSIHPSEKTYELASRRIHRELL PRLFN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06990			GDSL-like Lipase/Acylhydrolase...		Lus10026406 [exp]	0	1
AT3G25810			Terpenoid cyclases/Protein pre...		Lus10038179 [exp]	2.4	0.7630
AT1G54790			GDSL-like Lipase/Acylhydrolase...		Lus10029639 [exp]	21.9	0.7773
AT1G65620	AS2	AS2	ASYMMETRIC LEAVES 2, Lateral o...		Lus10013610 [exp]	27.7	0.7181
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10001037 [exp]	33.5	0.6970
					Lus10011438 [exp]	38.4	0.6670
AT4G25190		QWRF7	QWRF domain containing 7, Fami...		Lus10009604 [exp]	45.0	0.6514
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10033173 [exp]	48.2	0.6590
AT2G30340	AS2	LBD13	LOB domain-containing protein ...		Lus10029061 [exp]	49.8	0.6775
AT5G12060			Plant self-incompatibility pro...		Lus10023085 [exp]	52.8	0.6669
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006693 [exp]	53.1	0.6669

Compare expression of checked genes

Lus10026406 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.