Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06980 169 / 3e-54 unknown protein AT2G30230 149 / 3e-46 unknown protein AT1G29195 100 / 5e-27 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042244 [exp] 245 / 5e-84 AT1G06980 173 / 1e-55 unknown protein Lus10009561 [exp] 42 / 7e-05 AT1G06980 44 / 1e-05 unknown protein Lus10020386 [exp] 41 / 0.0002 AT1G06980 44 / 3e-05 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G153100 [exp] 161 / 4e-51 AT2G30230 189 / 5e-62 unknown protein Potri.019G123900 [exp] 156 / 4e-49 AT2G30230 159 / 3e-50 unknown protein Potri.011G066500 [exp] 102 / 1e-27 AT1G29195 170 / 6e-54 unknown protein Potri.004G057500 [exp] 99 / 1e-26 AT1G29195 163 / 2e-51 unknown protein Potri.006G076500 [exp] 53 / 4e-09 AT2G30230 42 / 7e-05 unknown protein Potri.004G149800 [exp] 44 / 5e-06 AT5G66580 91 / 7e-24 unknown protein Potri.002G242400 [exp] 43 / 4e-05 AT1G06980 45 / 9e-06 unknown protein Potri.018G143700 [exp] 41 / 0.0001 AT5G66580 44 / 7e-06 unknown protein Potri.009G110700 [exp] 40 / 0.0002 AT5G66580 77 / 2e-18 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026407 pacid=23156562 polypeptide=Lus10026407 locus=Lus10026407.g ID=Lus10026407.BGIv1.0 annot-version=v1.0 ATGGGAAACAGCTTAAGGTGCTGTTTGGCATGCGTGCTCCCATGCGGAGCCCTTGACCTGATCCGGATCGTCCACCTAAACGGCTACGTCGAGGAAATCA CCCGACCCGTCACCGCCGGCGATGGCCTCCACGCCAACCCCAACCACGTCCTCAGCAAGCCTTCCTCCCAGGGCGGCACCGTCGTCGGCCGCATCCTCAT CTTATCCCCTGACTCCGACCTCAAGCGGGGCAGCATCTACTTCCTCATCCCCAAATCCTCCCTCCCCGCCGACAAAAAGCGCCGCCCCAAATGCCTCGGC GGCGCCGGAAAGACTACTTCTTCTACCACCAAGACGGCCAATAATATCGTCAAGGATGATCCAGCGCCCGTCGATGTATGCGACCGGTATCTTAGGGATG CGGTGATCGCCGACCAGAAAAAGCTCTCGACTTCTTCTTCCCGGCGGCATAGACGGACCGGGAGATCCGGTGCGTGGCGGCAAAGTCTGGAGAGCATCAG CGAACTGGCGGAGTGA
AA sequence Show only first row Show all	>Lus10026407 pacid=23156562 polypeptide=Lus10026407 locus=Lus10026407.g ID=Lus10026407.BGIv1.0 annot-version=v1.0 MGNSLRCCLACVLPCGALDLIRIVHLNGYVEEITRPVTAGDGLHANPNHVLSKPSSQGGTVVGRILILSPDSDLKRGSIYFLIPKSSLPADKKRRPKCLG GAGKTTSSTTKTANNIVKDDPAPVDVCDRYLRDAVIADQKKLSTSSSRRHRRTGRSGAWRQSLESISELAE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06980			unknown protein		Lus10026407 [exp]	0	1
AT5G18860		NSH3	nucleoside hydrolase 3, inosin...		Lus10041249 [exp]	1.4	0.9713
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10000793 [exp]	2.8	0.9551
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Lus10001752 [exp]	4.0	0.9727
AT1G06980			unknown protein		Lus10042244 [exp]	4.5	0.9645
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10011746 [exp]	7.1	0.9691
AT1G77860		KOM	KOMPEITO, Rhomboid-related int...		Lus10003743 [exp]	8.0	0.9006
AT1G75030		ATLP-3	thaumatin-like protein 3 (.1)		Lus10032726 [exp]	8.8	0.9578
AT3G54770			RNA-binding (RRM/RBD/RNP motif...		Lus10041423 [exp]	8.8	0.9476
AT1G17710		AtPEPC1	Arabidopsis thaliana phosphoet...		Lus10015634 [exp]	9.2	0.9399
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10031377 [exp]	11.2	0.9644

Compare expression of checked genes

Lus10026407 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.