Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13620 429 / 9e-138 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT1G06970 417 / 2e-133 ATCHX14, CHX14 cation/hydrogen exchanger 14 (.1) AT2G30240 367 / 3e-114 ATCHX13 CATION/H+ EXCHANGER 13, Cation/hydrogen exchanger family protein (.1) AT5G01680 359 / 1e-111 ATCHX26 cation/H+ exchanger 26, ARABIDOPSIS THALIANA CATION/HYDROGEN EXCHANGER 26, cation/H+ exchanger 26 (.1) AT5G22900 357 / 1e-110 ATCHX3 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) AT3G44900 352 / 9e-109 ATCHX4 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) AT5G41610 348 / 2e-107 ATCHX18 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) AT4G23700 329 / 5e-100 ATCHX17 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) AT5G58460 328 / 2e-99 ATCHX25 cation/H+ exchanger 25, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 25, cation/H+ exchanger 25 (.1) AT1G64170 313 / 4e-94 ATCHX16 cation/H+ exchanger 16, cation/H+ exchanger 16, cation/H+ exchanger 16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035312 [exp] 441 / 9e-142 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10030013 [exp] 439 / 3e-141 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10043128 [exp] 348 / 4e-107 AT3G44900 540 / 0.0 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10017540 [exp] 334 / 2e-101 AT5G41610 1013 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10041344 [exp] 331 / 8e-101 AT5G22900 511 / 4e-170 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10016153 [exp] 316 / 3e-95 AT3G44900 434 / 2e-140 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10032332 [exp] 316 / 4e-95 AT4G23700 1030 / 0.0 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) Lus10026398 [exp] 311 / 4e-93 AT5G37060 649 / 0.0 cation/H+ exchanger 24, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 24, cation/H+ exchanger 24 (.1) Lus10021412 [exp] 310 / 4e-93 AT5G22900 422 / 5e-136 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G123800 [exp] 756 / 0 AT2G13620 443 / 5e-144 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.013G153200 [exp] 737 / 0 AT2G13620 427 / 2e-137 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.019G123700 [exp] 471 / 4e-154 AT2G13620 536 / 4e-179 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.007G105200 [exp] 437 / 8e-141 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.016G127800 [exp] 422 / 1e-135 AT5G01680 436 / 6e-142 cation/H+ exchanger 26, ARABIDOPSIS THALIANA CATION/HYDROGEN EXCHANGER 26, cation/H+ exchanger 26 (.1) Potri.010G183000 [exp] 388 / 2e-122 AT2G13620 474 / 8e-156 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.004G131300 [exp] 345 / 2e-105 AT2G13620 640 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.018G098300 [exp] 335 / 2e-102 AT5G22900 470 / 3e-154 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.001G096320 [exp] 331 / 8e-101 AT5G41610 1069 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.013G142301 [exp] 330 / 2e-100 AT5G41610 1067 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF00999 [flax] [poplar] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Lus10026408 pacid=23156481 polypeptide=Lus10026408 locus=Lus10026408.g ID=Lus10026408.BGIv1.0 annot-version=v1.0 ATGGCTGATGCTGATAATAAAAAAGCATCGTTAGAAGAAGCGCTGAACATAACATGGGTATGCCAATCGATGATCCATTCAAGATCAAGAGGCCTCTTCT TCGGCGACAATCCTTTCCATTTCCCGGCCCCTGTTCTCTTGGCTCAGCTCATCGTCTCCGCTTCCCTCAGCCTCATCATCCAAGTCCTCCTCACTCCCTT GGGCGAGAGCGCCTTCATCTCCATGATGCTTGCGGGTTTCGCGCTGGGGCCGTCGGTATGGGGGCATAACAGTAAATTCATCAAGGCATTGTACCCACTG AAGAGCTTCTACATCAACGAGACATTTGCATTTCTGGGTTGTCTCTTGTTCATGTTTGTAGTGGGAGCTAAGATGGACATGAGCATGGTAAGAAGAGCAG GGAAGAAAGCAGAGGTCATAGGCTTCCTAACTTTCTTAGTCCCCTTATCATTGAACCTAGTCACGGCGAGTTTCCTAGCGAATCGAACAACCGACATCGA TCCTGTCAACCCGAATCTGATATACCACATGGCAGTTTTGCAATCTGTCAGCTCATTCCATGTAATCACCTGCCTGTTAGCCGATCTAAAGCTGCTAAAC TCTGAGCTCGGTCAGCTAGCCATTTCGTCGTCCATGATAAGCGGGACTTGCAGTTGGGTTGTGGTGATTGTGATCTTCACAGCCAGGCAAGCAGGATTCG TGTCGAAATCGGCCATGGTCTGGACGTACTTCTCGACCTTGTTCCTCTTCCTGCTGGTTATATTCGTGATGAAGCCTGTAATGTACCTGATGGTTCGAAA CACACCCGAGGGGAAACCGATGAAGGAGAGCTACATTCTCGTAATCTTCGTCATGGTGCTCGGGATGGCCCTCTCCGGTGAGGTATGCGGGCAGCATTTC TTGATCGGACCGGTGATTCTCGGACTGGCTGTGCCGGATGGTCCTCCTCTGGGGACTGCGGTGGTGAACCGGCTCGAGTCGTTTGTGAGCTGGATCTTGT TACCTGGATACTTTGTGTATAGTGTTGCTGGGGTTAACGTGTTTACGGTGCACTCGAAGATTGTGAGTGTTGTTATTGCTTTGGGAGTGAGTAGCTTTGT TGGGAAGCTATTGGCTGTTGTTTTGCCTGCTTTGTTCTTCAAGATCCGTCCTCTGGATGCTCTCTCTTTGGGTCTCATCATGAGCTCCCAAGGGATCACT GATGTCATGCTCCTTCAACAGGCACGCCTCATCTTTCTTCTTGATGATCAAACATACAGTTTCATGGTGGCAGCAATTGTGCTAGTCACAGGAACACTCA CACCAATAATCAAACTACTCTACCAGCCATCAAAGAGACAGACTTCATCATGGAGAAGGAGCATTCAGAACACAACTCTAAACATGGAGCTGCGCTTACT GGTTTGCATATACGATCCGGACTCGACACCTTCCTTAATCAGCATCCTCGAGATATCGAAGCCATCAACAAAATGTCCTGTCTGCTGCTACGCAATCCAC CTATTGGAGATGGAAGGGAGACTCTCACCAATCTTGGTGCACCACAGACACAGCAGGGTCAGCTCCCAGGCGCGTAGCTCGAGCCACATCATCAACGCGT TCAGATCGTACGAGGACATAACGAGCAGCGTGTCGTTCACTTTCTATACTGCCATCGCGCCTTTCAACACGATCCACGAAGAAGTCCACAGGTTAGCCAT GGAGAAGAGGACATCCATGTTGATCTTGCCCTTCCACAGACAGTGGAAGGTTCACGGGTTCGAGGATGACCTCAAGGCGAGGTCAGTCAACCGCCACATC CTCCACAAATCTCCGTGCTCAGTTGGGGTGTTCATCGATCGAGGTACATTGGAAAAATTTCTTATACGGATGGCCACAACAAATTCACCAACAGGATCAG CAGCATCAGCGAACACCAATGCAATGATGTGCAGCATTGGTGTGATATTCATACAAGGGAGGGATGATAGGGAAGCATTAGCCTATGTAATGAGGATGGG AGAGAAGACTAATGTAGGGGTGACATTGGTGCACATAATCGAGACCGATTACCAGCCGTCTGCAGTAAACGCTGTGGTTGACCTGCAGCTGGATTATCAG ATCTTATCGGAGTTCAAGATCGCGACTGTGTCGAAGAAGCACCATGTTTTGAAAGAAGAGAATGTGCAGGATAGTGTGGAGATGGTGAATGTGGTGAGGC GGTTCGAAAATGTGTTCGATATGATCGTTGTGGGGAGGCACCACGATAGGGAATCGATCATATACAGAGGGTTGATGGACTGGAACTACGAGTTTCCGGA GCTGGGGTTTCTGGGAGATATGTTGGTGGCTTCGGATAGTGAGTGTAAGGTGTGTGTGCTGGTTGTGCAGCAGCAGAGGTTAGGATGGGTAGGTGGGGAA GTAGCTGAGATGGGTTCTATTTCTGATGATGCTATGTCTACTACTACTAGTGCTAACAATGTTAGTAACCCTTGGAAACCTAGTCAAGTTTGGCCTGCAA AAATTTAA
AA sequence Show only first row Show all	>Lus10026408 pacid=23156481 polypeptide=Lus10026408 locus=Lus10026408.g ID=Lus10026408.BGIv1.0 annot-version=v1.0 MADADNKKASLEEALNITWVCQSMIHSRSRGLFFGDNPFHFPAPVLLAQLIVSASLSLIIQVLLTPLGESAFISMMLAGFALGPSVWGHNSKFIKALYPL KSFYINETFAFLGCLLFMFVVGAKMDMSMVRRAGKKAEVIGFLTFLVPLSLNLVTASFLANRTTDIDPVNPNLIYHMAVLQSVSSFHVITCLLADLKLLN SELGQLAISSSMISGTCSWVVVIVIFTARQAGFVSKSAMVWTYFSTLFLFLLVIFVMKPVMYLMVRNTPEGKPMKESYILVIFVMVLGMALSGEVCGQHF LIGPVILGLAVPDGPPLGTAVVNRLESFVSWILLPGYFVYSVAGVNVFTVHSKIVSVVIALGVSSFVGKLLAVVLPALFFKIRPLDALSLGLIMSSQGIT DVMLLQQARLIFLLDDQTYSFMVAAIVLVTGTLTPIIKLLYQPSKRQTSSWRRSIQNTTLNMELRLLVCIYDPDSTPSLISILEISKPSTKCPVCCYAIH LLEMEGRLSPILVHHRHSRVSSQARSSSHIINAFRSYEDITSSVSFTFYTAIAPFNTIHEEVHRLAMEKRTSMLILPFHRQWKVHGFEDDLKARSVNRHI LHKSPCSVGVFIDRGTLEKFLIRMATTNSPTGSAASANTNAMMCSIGVIFIQGRDDREALAYVMRMGEKTNVGVTLVHIIETDYQPSAVNAVVDLQLDYQ ILSEFKIATVSKKHHVLKEENVQDSVEMVNVVRRFENVFDMIVVGRHHDRESIIYRGLMDWNYEFPELGFLGDMLVASDSECKVCVLVVQQQRLGWVGGE VAEMGSISDDAMSTTTSANNVSNPWKPSQVWPAKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Lus10026408 [exp]	0	1
AT4G36830		HOS3-1	GNS1/SUR4 membrane protein fam...		Lus10016797 [exp]	5.7	0.7274
AT1G09195			unknown protein		Lus10010931 [exp]	6.0	0.6892
AT2G19710			Regulator of Vps4 activity in ...		Lus10040542 [exp]	8.7	0.6775
AT3G01910		AT-SO, ATSO, SO...	sulfite oxidase (.1.2.3)		Lus10041560 [exp]	16.2	0.6669
AT4G25720		ATQC, QCT	GLUTAMINYL CYCLOTRANSFERASE, A...		Lus10038844 [exp]	43.6	0.6090
AT2G22260			oxidoreductase, 2OG-Fe(II) oxy...		Lus10038746 [exp]	56.2	0.5956
AT1G78620			Protein of unknown function DU...		Lus10038149 [exp]	57.7	0.6279
AT1G76570			Chlorophyll A-B binding family...		Lus10005421 [exp]	58.6	0.6230
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10030041 [exp]	66.6	0.5550
AT4G30780			unknown protein		Lus10007704 [exp]	68.2	0.5896

Compare expression of checked genes

Lus10026408 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.