Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38470 175 / 3e-52 WRKY ATWRKY33, WRKY33 WRKY DNA-binding protein 33 (.1) AT5G07100 152 / 2e-46 WRKY WRKY26 WRKY DNA-binding protein 26 (.1.2) AT1G13960 152 / 7e-44 WRKY WRKY4 WRKY DNA-binding protein 4 (.1.2) AT4G26640 152 / 1e-43 WRKY ATWRKY20, WRKY20 WRKY family transcription factor family protein (.1.2) AT5G56270 154 / 3e-43 WRKY ATWRKY2, WRKY2, WRKY23 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) AT2G03340 150 / 9e-43 WRKY WRKY3 WRKY DNA-binding protein 3 (.1) AT3G01080 143 / 9e-41 WRKY ATWRKY58, WRKY58 WRKY DNA-binding protein 58 (.1) AT2G30250 140 / 5e-40 WRKY ATWRKY25, WRKY25 WRKY DNA-binding protein 25 (.1) AT4G26440 139 / 1e-38 WRKY ATWRKY34, MSP3, WRKY34 MICROSPORE-SPECIFIC PROMOTER 3, WRKY DNA-binding protein 34 (.1) AT2G44745 117 / 1e-32 WRKY WRKY12 WRKY family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042243 [exp] 247 / 5e-80 AT5G07100 323 / 5e-105 WRKY DNA-binding protein 26 (.1.2) Lus10001265 [exp] 182 / 8e-55 AT2G38470 394 / 2e-132 WRKY DNA-binding protein 33 (.1) Lus10012215 [exp] 182 / 1e-54 AT2G38470 393 / 2e-131 WRKY DNA-binding protein 33 (.1) Lus10027139 [exp] 166 / 2e-47 AT5G56270 528 / 1e-179 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10030424 [exp] 159 / 2e-46 AT1G13960 421 / 7e-144 WRKY DNA-binding protein 4 (.1.2) Lus10032580 [exp] 157 / 3e-46 AT4G26640 369 / 5e-125 WRKY family transcription factor family protein (.1.2) Lus10032887 [exp] 161 / 7e-46 AT5G56270 540 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10026634 [exp] 156 / 2e-45 AT1G13960 409 / 1e-139 WRKY DNA-binding protein 4 (.1.2) Lus10043167 [exp] 154 / 3e-44 AT4G26640 473 / 9e-163 WRKY family transcription factor family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G123500 [exp] 199 / 2e-60 AT2G38470 299 / 3e-94 WRKY DNA-binding protein 33 (.1) Potri.013G153400 [exp] 197 / 5e-60 AT2G38470 329 / 5e-106 WRKY DNA-binding protein 33 (.1) Potri.016G128300 [exp] 185 / 2e-55 AT2G38470 377 / 8e-125 WRKY DNA-binding protein 33 (.1) Potri.006G105300 [exp] 178 / 5e-53 AT2G38470 341 / 4e-111 WRKY DNA-binding protein 33 (.1) Potri.010G163000 [exp] 155 / 6e-45 AT1G13960 431 / 5e-147 WRKY DNA-binding protein 4 (.1.2) Potri.001G361600 [exp] 155 / 3e-44 AT4G26640 540 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.011G169300 [exp] 154 / 2e-43 AT5G56270 588 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.001G472800 [exp] 154 / 2e-43 AT5G56270 585 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.011G087900 [exp] 153 / 2e-43 AT4G26640 555 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.004G120800 [exp] 150 / 1e-42 AT2G03340 358 / 5e-118 WRKY DNA-binding protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10026409 pacid=23156411 polypeptide=Lus10026409 locus=Lus10026409.g ID=Lus10026409.BGIv1.0 annot-version=v1.0 ATGGACACTCCGGAGAACTCTTCGATTTCGATTGGAGGAGGAGACGATGATTTTGACTCGCACCGATCGGGGAGGGATGAGATTGATGAGGATGAACCTG ATGCCAAACGATGGAGAAGAGACGTAGAGAACGACGGAATATCATCATCATCAATGGCTGCAACAGGAAGCAAAACGGTGAGAGAGCCAAGAGTCGTGGT ACAAACAAGGAGCGACATAGACATTCTCGACGACGGGTACAAGTGGAGGAAGTACGGCCAGAAGGTGGTGAAGGGAAACCCTAATCCAAGAAGCTACTAC AAATGCACGTACGTCGGTTGTCCCGTGAGGAAGCATGTGGAAAGGGCTTCCACAGATTTGCGATCGGTAATCACCACCTACGAAGGTAAGCACAACCACG ACGTCCCTGCAGCTCGCGGTAGCAGCCACTCTGCAGCGAGAAGAGCGGTGCAGCCGGAGAGCAATACTACTGCACCATCGATGAGAAGGCCGCCTATGGT GCAACAGCATGAGGAAGTAGGGCTCGGATTTTCGGAGCTGATGATGGGGAATGCAATGGGGGAGAGCATCTTCAACAGGAGTACTAAAGATGAGCCAAGA GATGAAAGCTTCTTGGAATCCTTGTTGTTTTGA
AA sequence Show only first row Show all	>Lus10026409 pacid=23156411 polypeptide=Lus10026409 locus=Lus10026409.g ID=Lus10026409.BGIv1.0 annot-version=v1.0 MDTPENSSISIGGGDDDFDSHRSGRDEIDEDEPDAKRWRRDVENDGISSSSMAATGSKTVREPRVVVQTRSDIDILDDGYKWRKYGQKVVKGNPNPRSYY KCTYVGCPVRKHVERASTDLRSVITTYEGKHNHDVPAARGSSHSAARRAVQPESNTTAPSMRRPPMVQQHEEVGLGFSELMMGNAMGESIFNRSTKDEPR DESFLESLLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Lus10026409 [exp]	0	1
AT1G59710			Protein of unknown function (D...		Lus10013281 [exp]	2.6	0.8592
AT5G13200			GRAM domain family protein (.1...		Lus10035154 [exp]	3.7	0.8420
AT1G21010			unknown protein		Lus10035664 [exp]	4.5	0.8554
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10011820 [exp]	4.6	0.8590
AT2G26530		AR781	Protein of unknown function (D...		Lus10032766 [exp]	4.9	0.8476
AT4G36500			unknown protein		Lus10025997 [exp]	5.1	0.8173
AT5G57510			unknown protein		Lus10009171 [exp]	6.0	0.7727
AT1G72470		ATEXO70D1	exocyst subunit exo70 family p...		Lus10013163 [exp]	7.1	0.8513
AT1G59710			Protein of unknown function (D...		Lus10030804 [exp]	7.5	0.8590
AT4G39830			Cupredoxin superfamily protein...		Lus10022504 [exp]	8.5	0.8351

Compare expression of checked genes

Lus10026409 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.