Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22590 81 / 1e-18 UDP-Glycosyltransferase superfamily protein (.1) AT5G49690 78 / 2e-17 UDP-Glycosyltransferase superfamily protein (.1) AT5G65550 77 / 2e-17 UDP-Glycosyltransferase superfamily protein (.1) AT2G36780 53 / 1e-08 UDP-Glycosyltransferase superfamily protein (.1) AT4G34131 52 / 2e-08 UGT73B3 UDP-glucosyl transferase 73B3 (.1) AT4G34135 51 / 3e-08 UGT73B2 UDP-glucosyltransferase 73B2 (.1.2) AT2G36750 51 / 3e-08 UGT73C1, UGT72C1 UDP-glucosyl transferase 73C1 (.1) AT2G36770 50 / 7e-08 UDP-Glycosyltransferase superfamily protein (.1) AT2G36760 50 / 1e-07 UGT73C2 UDP-glucosyl transferase 73C2 (.1) AT4G09500 49 / 2e-07 UDP-Glycosyltransferase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042242 [exp] 141 / 6e-42 AT5G65550 280 / 9e-92 UDP-Glycosyltransferase superfamily protein (.1) Lus10042241 [exp] 120 / 1e-35 AT5G65550 168 / 4e-51 UDP-Glycosyltransferase superfamily protein (.1) Lus10026412 [exp] 102 / 3e-28 AT2G22590 173 / 1e-52 UDP-Glycosyltransferase superfamily protein (.1) Lus10026411 [exp] 92 / 6e-25 AT5G65550 94 / 8e-24 UDP-Glycosyltransferase superfamily protein (.1) Lus10035951 [exp] 90 / 2e-21 AT2G22590 464 / 3e-161 UDP-Glycosyltransferase superfamily protein (.1) Lus10025711 [exp] 88 / 5e-21 AT2G22590 473 / 2e-164 UDP-Glycosyltransferase superfamily protein (.1) Lus10012726 [exp] 75 / 2e-16 AT2G22590 471 / 3e-164 UDP-Glycosyltransferase superfamily protein (.1) Lus10027850 [exp] 75 / 3e-16 AT5G49690 560 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10014438 [exp] 52 / 1e-08 AT2G36780 206 / 2e-63 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G030600 [exp] 93 / 8e-23 AT2G22590 537 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.010G182575 [exp] 86 / 3e-20 AT5G49690 468 / 7e-163 UDP-Glycosyltransferase superfamily protein (.1) Potri.012G034100 [exp] 80 / 3e-18 AT2G22590 505 / 2e-177 UDP-Glycosyltransferase superfamily protein (.1) Potri.003G184400 [exp] 74 / 5e-16 AT5G49690 549 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.014G088400 [exp] 72 / 2e-15 AT2G22590 374 / 4e-125 UDP-Glycosyltransferase superfamily protein (.1) Potri.002G162300 [exp] 67 / 1e-13 AT2G22590 372 / 6e-125 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G042800 [exp] 66 / 4e-13 AT5G49690 377 / 3e-127 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G041900 [exp] 52 / 1e-08 AT5G54010 348 / 1e-116 UDP-Glycosyltransferase superfamily protein (.1) Potri.016G097400 [exp] 50 / 1e-07 AT3G53150 626 / 0.0 UDP-glucosyl transferase 73D1 (.1) Potri.006G179700 [exp] 49 / 3e-07 AT5G54010 349 / 2e-116 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026410 pacid=23156538 polypeptide=Lus10026410 locus=Lus10026410.g ID=Lus10026410.BGIv1.0 annot-version=v1.0 ATGGCGGACGACGAAATCCACAAGAAGCTCCACATCGCGGTCTTCCCATGGCTAGCTTTCGGCCACATGATTCCATTCCTCGAGATCTCCAAGCTCTTAC CCCAAAAAGGCCACTCAGTTTCCTACATCTCAACACCACGTAACATCAACCGTCCCCCCCAATTCCCTCCTCATCTTGCCCATATGTCGGATCAGGGGCT GATCGCGAGGGTGTTTGCGGAGAAGGAGGTCGGTGTTGAGATTCCGAGGGACGAAGAGGACGGGGCTTTCTCGAGAGGAGATGAGGAGGCGACGGTGAGG ACGATGGTGGCGGAGGAGAAGGAGAAGGTGTTTGGGAATCGAGAGGTTCATGATCGTTGCTTTGCTGAGTTTGTGAGGTTTCTTGAAGATCGTCGTAGAA ACAAGGCGTTGGACGAGACACCTGGTAAATTGAGGATTACTTAA
AA sequence Show only first row Show all	>Lus10026410 pacid=23156538 polypeptide=Lus10026410 locus=Lus10026410.g ID=Lus10026410.BGIv1.0 annot-version=v1.0 MADDEIHKKLHIAVFPWLAFGHMIPFLEISKLLPQKGHSVSYISTPRNINRPPQFPPHLAHMSDQGLIARVFAEKEVGVEIPRDEEDGAFSRGDEEATVR TMVAEEKEKVFGNREVHDRCFAEFVRFLEDRRRNKALDETPGKLRIT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65550			UDP-Glycosyltransferase superf...		Lus10026410 [exp]	0	1
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10020950 [exp]	9.9	0.6129
AT5G67300	MYB	ATMYB44, AtMYBr...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10019314 [exp]	72.8	0.5795
AT3G18650	MADS	AGL103	AGAMOUS-like 103 (.1)		Lus10022594 [exp]	81.2	0.5233
AT2G24610		ATCNGC14	cyclic nucleotide-gated channe...		Lus10026924 [exp]	106.6	0.5601
AT5G65550			UDP-Glycosyltransferase superf...		Lus10026411 [exp]	109.2	0.5203
AT1G32340		NHL8	NDR1/HIN1-like 8 (.1)		Lus10004569 [exp]	136.9	0.5522
AT3G11770			Polynucleotidyl transferase, r...		Lus10036491 [exp]	139.0	0.5272
AT4G28703			RmlC-like cupins superfamily p...		Lus10025947 [exp]	145.9	0.5262
AT1G13510			Protein of unknown function (D...		Lus10031915 [exp]	222.5	0.5147
AT1G03050			ENTH/ANTH/VHS superfamily prot...		Lus10000201 [exp]	232.9	0.5028

Compare expression of checked genes

Lus10026410 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.