Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22590 171 / 7e-52 UDP-Glycosyltransferase superfamily protein (.1) AT5G49690 154 / 3e-45 UDP-Glycosyltransferase superfamily protein (.1) AT5G65550 153 / 6e-45 UDP-Glycosyltransferase superfamily protein (.1) AT5G54060 91 / 4e-22 UF3GT UDP-glucose:flavonoid 3-o-glucosyltransferase (.1) AT1G64920 89 / 5e-21 UDP-Glycosyltransferase superfamily protein (.1) AT5G54010 86 / 3e-20 UDP-Glycosyltransferase superfamily protein (.1) AT1G50580 82 / 1e-18 UDP-Glycosyltransferase superfamily protein (.1) AT2G22930 81 / 1e-18 UDP-Glycosyltransferase superfamily protein (.1) AT4G09500 81 / 2e-18 UDP-Glycosyltransferase superfamily protein (.1.2) AT3G29630 80 / 5e-18 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042241 [exp] 211 / 2e-71 AT5G65550 168 / 4e-51 UDP-Glycosyltransferase superfamily protein (.1) Lus10025711 [exp] 160 / 1e-47 AT2G22590 473 / 2e-164 UDP-Glycosyltransferase superfamily protein (.1) Lus10035951 [exp] 155 / 1e-45 AT2G22590 464 / 3e-161 UDP-Glycosyltransferase superfamily protein (.1) Lus10012726 [exp] 142 / 1e-40 AT2G22590 471 / 3e-164 UDP-Glycosyltransferase superfamily protein (.1) Lus10027850 [exp] 125 / 1e-34 AT5G49690 560 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10026410 [exp] 102 / 4e-28 AT5G65550 82 / 1e-18 UDP-Glycosyltransferase superfamily protein (.1) Lus10008453 [exp] 98 / 2e-24 AT5G54010 539 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10003154 [exp] 92 / 5e-22 AT5G54010 318 / 3e-104 UDP-Glycosyltransferase superfamily protein (.1) Lus10013337 [exp] 88 / 8e-21 AT5G54010 452 / 1e-156 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G182575 [exp] 164 / 5e-49 AT5G49690 468 / 7e-163 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G030600 [exp] 163 / 8e-49 AT2G22590 537 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.003G184400 [exp] 147 / 1e-42 AT5G49690 549 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.014G088400 [exp] 145 / 9e-42 AT2G22590 374 / 4e-125 UDP-Glycosyltransferase superfamily protein (.1) Potri.012G034100 [exp] 144 / 1e-41 AT2G22590 505 / 2e-177 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G042800 [exp] 136 / 1e-38 AT5G49690 377 / 3e-127 UDP-Glycosyltransferase superfamily protein (.1) Potri.002G162300 [exp] 135 / 2e-38 AT2G22590 372 / 6e-125 UDP-Glycosyltransferase superfamily protein (.1) Potri.011G097900 [exp] 98 / 2e-24 AT5G54010 498 / 1e-174 UDP-Glycosyltransferase superfamily protein (.1) Potri.011G061000 [exp] 90 / 1e-21 AT5G54010 468 / 6e-163 UDP-Glycosyltransferase superfamily protein (.1) Potri.006G179700 [exp] 82 / 1e-18 AT5G54010 349 / 2e-116 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026412 pacid=23156440 polypeptide=Lus10026412 locus=Lus10026412.g ID=Lus10026412.BGIv1.0 annot-version=v1.0 ATGGCGAACAAGGAAAGCAAGAAGCAGTTGCACATCGCAGTCTTCCCATGGCTGGCATACGGCCACTTGATTCCATTCCTAGAGCTCTCCAAGCTCTTAG CCGAAAAAGGTCAATCAATTTCCTTCATTTCCACCCCACGTAACATCAACCGTCTCCCCCAAATCCCTCCTCATCTTTCTCATCTCATCAACTTCATCCC CATTCCTCTTCCCGCCGGCGACGGGAACCTCCCCGATGGAGCAGAATCCACCTCCGACCTCCCCCGGCACCTTATCCCTCACCTCAAGCTCGCCTACGAC GGTCTCGAACAGGAGGTGGACCAATTCTTCGAGGCCAGACGACCGGATTGGGTTATTCACGATTTCGCCCCATACTGGCTCCCGCGAATTGCAGTTAAGA GCAACGTTTCCAGAGCTTTCTTCTCCACTATCTCGGCCGCCGCATGGTGCTTCTTCGGGCCGTTGGATTCCACATGA
AA sequence Show only first row Show all	>Lus10026412 pacid=23156440 polypeptide=Lus10026412 locus=Lus10026412.g ID=Lus10026412.BGIv1.0 annot-version=v1.0 MANKESKKQLHIAVFPWLAYGHLIPFLELSKLLAEKGQSISFISTPRNINRLPQIPPHLSHLINFIPIPLPAGDGNLPDGAESTSDLPRHLIPHLKLAYD GLEQEVDQFFEARRPDWVIHDFAPYWLPRIAVKSNVSRAFFSTISAAAWCFFGPLDST

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22590			UDP-Glycosyltransferase superf...		Lus10026412 [exp]	0	1
AT5G65550			UDP-Glycosyltransferase superf...		Lus10026411 [exp]	1.0	0.6968
AT1G14870		AtPCR2, PCR2	PLANT CADMIUM RESISTANCE 2 (.1...		Lus10041474 [exp]	11.7	0.5851
AT3G47570			Leucine-rich repeat protein ki...		Lus10030847 [exp]	15.1	0.6160
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10017587 [exp]	18.6	0.6066
AT3G51070			S-adenosyl-L-methionine-depend...		Lus10041804 [exp]	22.6	0.5799
AT1G57790			F-box family protein (.1)		Lus10019204 [exp]	23.9	0.5732
AT4G05400			copper ion binding (.1.2)		Lus10031070 [exp]	31.1	0.6004
					Lus10038304 [exp]	35.3	0.5617
AT3G60730			Plant invertase/pectin methyle...		Lus10009287 [exp]	36.9	0.5291
AT2G34930			disease resistance family prot...		Lus10024737 [exp]	37.2	0.5890

Compare expression of checked genes

Lus10026412 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.