Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30260 290 / 1e-99 U2B'' U2 small nuclear ribonucleoprotein B (.1) AT1G06960 280 / 5e-96 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT2G47580 201 / 1e-64 U1A spliceosomal protein U1A (.1) AT4G12640 50 / 8e-07 RNA recognition motif (RRM)-containing protein (.1) AT5G12190 47 / 1e-06 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G21320 44 / 4e-05 nucleotide binding;nucleic acid binding (.1.2) AT3G21215 43 / 0.0001 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G09230 42 / 0.0003 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G13700 40 / 0.0005 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042240 [exp] 375 / 2e-133 AT2G30260 352 / 2e-124 U2 small nuclear ribonucleoprotein B (.1) Lus10008424 [exp] 214 / 1e-69 AT2G47580 365 / 4e-129 spliceosomal protein U1A (.1) Lus10003358 [exp] 211 / 1e-68 AT2G47580 367 / 7e-130 spliceosomal protein U1A (.1) Lus10018903 [exp] 49 / 2e-06 AT1G21320 182 / 5e-54 nucleotide binding;nucleic acid binding (.1.2) Lus10028599 [exp] 46 / 8e-06 AT1G21320 206 / 4e-66 nucleotide binding;nucleic acid binding (.1.2) Lus10026814 [exp] 44 / 1e-05 AT5G12190 225 / 8e-78 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10028598 [exp] 44 / 5e-05 AT1G76940 135 / 9e-38 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10025188 [exp] 41 / 0.0007 AT4G12640 567 / 0.0 RNA recognition motif (RRM)-containing protein (.1) Lus10016070 [exp] 41 / 0.0008 AT4G12640 554 / 0.0 RNA recognition motif (RRM)-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G121400 [exp] 329 / 3e-115 AT2G30260 305 / 7e-106 U2 small nuclear ribonucleoprotein B (.1) Potri.013G153700 [exp] 322 / 1e-112 AT2G30260 297 / 8e-103 U2 small nuclear ribonucleoprotein B (.1) Potri.014G127800 [exp] 220 / 4e-72 AT2G47580 347 / 6e-122 spliceosomal protein U1A (.1) Potri.002G203600 [exp] 216 / 3e-70 AT2G47580 349 / 1e-122 spliceosomal protein U1A (.1) Potri.006G224900 [exp] 52 / 1e-07 AT1G21320 122 / 2e-33 nucleotide binding;nucleic acid binding (.1.2) Potri.012G019300 [exp] 49 / 8e-07 AT1G76940 167 / 2e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.015G009000 [exp] 48 / 2e-06 AT1G76940 170 / 8e-53 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G273200 [exp] 45 / 4e-06 AT5G12190 227 / 1e-78 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.013G054300 [exp] 45 / 3e-05 AT1G09230 253 / 3e-79 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G171900 [exp] 45 / 3e-05 AT4G12640 698 / 0.0 RNA recognition motif (RRM)-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10026413 pacid=23156399 polypeptide=Lus10026413 locus=Lus10026413.g ID=Lus10026413.BGIv1.0 annot-version=v1.0 ATGCTAACGGCTGATATTCCGCCCAATCAAACCATCTACATTAAAAACCTCAACGAGAAGGTCAAGAAGGAAGAATTGAGAAGATCGCTTTACTGTTTGT TTTCTCAATATGGAAGGATTCTGGATGTTGTTGCCTTGAAGACTGCCAAACTCAGAGGTCAAGCATGGGTTTGCTTCAGTGAAGTGACAGCTGCCAGTAA TGCAGTTAGGCAAATGCAAGGTTTTCCTTTCTATGAAAAACCCATGCGCATCCAATATGCAAAAACAAAGTCAGACTGCCTCGTAGAGGCAGAAGGAGTC TATGATCCAAATGCAAAGAAGAAGAAAAAGCAGGAAGAGAAAGCTGAAAAGAAAAGACGTGCTGAAGAAGCTCAGCAATCTGCCCCAGCTAATGGCGCAG CTGCTGACAGTAACAGAACCCATGCTCCTTTCCGCCAAGGAAGCAGTGGCGGTGATCAAGAAGCAATTCCACCGAATAACATTCTGTTCATCCAGAATCT CCCGCATGGAACCACGAGCATGATGCTGCACGTGTTGTTCCAACAGTACCCTGGCTTCAAGGAAGTCCGGATGGTGGAAGCCAAGCCGGGGATCGCATTT GTGGAGTTCGAAGATGATGTCCAGTCATCCATGGCGATGCAGGCACTTCAGGGCTTCAAGATTACTCCTCAAAACCCCATGGCTATCAGCTTTGCCAAGA AGTAG
AA sequence Show only first row Show all	>Lus10026413 pacid=23156399 polypeptide=Lus10026413 locus=Lus10026413.g ID=Lus10026413.BGIv1.0 annot-version=v1.0 MLTADIPPNQTIYIKNLNEKVKKEELRRSLYCLFSQYGRILDVVALKTAKLRGQAWVCFSEVTAASNAVRQMQGFPFYEKPMRIQYAKTKSDCLVEAEGV YDPNAKKKKKQEEKAEKKRRAEEAQQSAPANGAAADSNRTHAPFRQGSSGGDQEAIPPNNILFIQNLPHGTTSMMLHVLFQQYPGFKEVRMVEAKPGIAF VEFEDDVQSSMAMQALQGFKITPQNPMAISFAKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30260		U2B''	U2 small nuclear ribonucleopro...		Lus10026413 [exp]	0	1
AT1G26750			unknown protein		Lus10031376 [exp]	3.9	0.8301
AT4G30220		RUXF	small nuclear ribonucleoprotei...		Lus10037606 [exp]	4.1	0.8534
AT2G34160			Alba DNA/RNA-binding protein (...		Lus10043279 [exp]	6.3	0.8481
AT2G21240	BBR_BPC	BPC4, BBR/BPC4,...	basic pentacysteine 4 (.1.2)		Lus10031078 [exp]	7.1	0.8344
AT5G62300			Ribosomal protein S10p/S20e fa...		Lus10038910 [exp]	7.3	0.8300
AT2G26470			unknown protein		Lus10038230 [exp]	7.5	0.8257
AT5G08180			Ribosomal protein L7Ae/L30e/S1...		Lus10010993 [exp]	11.4	0.8133
AT3G08880			unknown protein		Lus10012504 [exp]	12.5	0.8064
AT5G20510	Alfin	AL5	alfin-like 5 (.1)		Lus10037655 [exp]	14.0	0.8320
AT1G50660			unknown protein		Lus10043111 [exp]	17.2	0.8080

Compare expression of checked genes

Lus10026413 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.