Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44370 400 / 2e-133 Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain (.1) AT1G65080 357 / 3e-117 Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain (.1) AT5G62050 64 / 1e-10 ATOXA1, OXA1AT, OXA1 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1) AT2G46470 51 / 1e-06 OXA1L inner membrane protein OXA1-like (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001639 [exp] 74 / 8e-14 AT5G62050 382 / 3e-130 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1) Lus10001427 [exp] 74 / 9e-14 AT5G62050 387 / 4e-132 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1) Lus10023088 [exp] 59 / 6e-09 AT5G62050 412 / 6e-142 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G087950 [exp] 494 / 4e-170 AT3G44370 413 / 1e-138 Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain (.1) Potri.009G121800 [exp] 456 / 5e-156 AT3G44370 415 / 5e-140 Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain (.1) Potri.018G140100 [exp] 68 / 7e-12 AT5G62050 365 / 8e-124 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1) Potri.006G073000 [exp] 66 / 4e-11 AT5G62050 373 / 1e-126 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1) Potri.001G091800 [exp] 57 / 2e-08 AT5G62050 451 / 5e-157 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0376 [flax] [poplar] Oxa1 PF02096 [flax] [poplar] 60KD_IMP 60Kd inner membrane protein
Representative CDS sequence Show only first row Show all	>Lus10026414 pacid=23156480 polypeptide=Lus10026414 locus=Lus10026414.g ID=Lus10026414.BGIv1.0 annot-version=v1.0 ATGGCAATCCCCAAGCTGATTTACTCCCAGCTCCGGCGAACTCGGACGCTCTCCGCTCTCCGCTCTATTACTCCGGCGTGCGTCTCCCGCCAATTCCATG CCGGAACCGAGGCCAATCGCAGCTCCTTCACTTCACAACCTCGTGTTTCTTGCTTTCCCGCTTGTTCTCACTCCGGATGGGAACATTTACATCACCGGGC CTTCTCCACTCGGCCAAACGAGGAGGACTCCGGGTTCACCGATGATACTGTGATTGGGTTAGCATCAAAGGTGGAACCTTTGGGGCTGGATGCTGAAGTT GCTAAAGGAGTTGCTGATATTTCTGTTACAGGAGGAGAAGAGTCGATTCTCCCTGTCCGAGTTCTGATTTCGCTGCTGGATGGCTACCACGATGTTAGTG GCTTGCCGTGGTGGTTTGTAATTGCATCAGCCACATTGGTTATGAGAATGACATTGTTCCCTTTCATCGTCCTGCAACTTCGGAAAATGAAACAGATTTC TGAAATTTTCCCCAAGCTGCCTCCTCCAATTCCACCACCTCAATCAGGGAGGAGCTTCACCGATCAGATTTCACTTTTCCGGAAAGAAAGGAAAGCATTG GGCTGTCCATCGTATTTGTGGTTTCTGGCATCCTTCTCTGTTCAGGTTCCATGTTTTCTCTTGGCAGTAACTAGTATACGAAGAATGTCTCTTGATCATC ACCCGGGGTTTGAGTGTGGTGGTGCTTTGTGGTTCCAGAACTTGACTGAGTTTCCGCATGGTCTTCTAGGCTCCATATTTCCAGTATTGATTTCAGGTCT TCACTTTGTTAATGTCCAGCTGGCTTTTCGAAAATCTTCATTGCAGCAAATGAGTGGCCCATTGGGGATGCTAGCAAAACGTTCTTATTCTCCTTACAGA AATGATCTCTGTTTGCTATGGCAGTATTACAAACACTACTTGGATTTTCTTGTGCTGCCTATGTTTTACATTGGTTATTGCATACCACAGCACTTTATTC TCAGGAGTCCTGGTGTTCGAGCAAAATTAGGTTTACCAGAAACAGAGTCTCCATCAACTGCTCGAAATGCCACAGGAGTGGCTGCACCTGAAAACCCAAC CTTGGAATCATCAAAGTGGCAGAAAGTTGATCCTGAGAATTTATCCCCTGTGGAACTTCTTGGGATATCTGTTAAACTCATTTCCACCGGACATAGAGAA CAAGCAATTCCGTTGTTAAGAGCGGCAGTTGTAAAGGACCCTGATTGCATAAGAGCTTTGGCTGTTTTGGGACAGACTCTTCTGCAAAAAGGAGAGCATG CAGAAGCTGCTCATCATTTAGAGCCAGTTATAACCAAGATTCTTGCTAAAGGTGTTCCAACGCAAGCAGAGGAGGTTGATATCTTAATTCTTGCATCTCA ATGGGCCGGCATTGCAAATATACAGCAGGGGAAGCAAGATGAAGGACTTGTTCACCTGGAAAGAGTTGCAAGTTTGAAAGAGCCTGAGGACCCAAAGAGC AAAGTCCATTACTTTGATGGTCTGATACTACTTGCCAGTGCATTATACGACGGAGGCAGGAAATCTGAAGCTCTAACCTATGCACGTTTAGCTGTGGCTT ATAATCCTACTAAATACAACAAGTTCTTGGAGATGTGTGAAAACAGTGAAGACAATCTTGTTATCGACCTTGTCAGCAGCCGGCGGCGAGATTACTGA
AA sequence Show only first row Show all	>Lus10026414 pacid=23156480 polypeptide=Lus10026414 locus=Lus10026414.g ID=Lus10026414.BGIv1.0 annot-version=v1.0 MAIPKLIYSQLRRTRTLSALRSITPACVSRQFHAGTEANRSSFTSQPRVSCFPACSHSGWEHLHHRAFSTRPNEEDSGFTDDTVIGLASKVEPLGLDAEV AKGVADISVTGGEESILPVRVLISLLDGYHDVSGLPWWFVIASATLVMRMTLFPFIVLQLRKMKQISEIFPKLPPPIPPPQSGRSFTDQISLFRKERKAL GCPSYLWFLASFSVQVPCFLLAVTSIRRMSLDHHPGFECGGALWFQNLTEFPHGLLGSIFPVLISGLHFVNVQLAFRKSSLQQMSGPLGMLAKRSYSPYR NDLCLLWQYYKHYLDFLVLPMFYIGYCIPQHFILRSPGVRAKLGLPETESPSTARNATGVAAPENPTLESSKWQKVDPENLSPVELLGISVKLISTGHRE QAIPLLRAAVVKDPDCIRALAVLGQTLLQKGEHAEAAHHLEPVITKILAKGVPTQAEEVDILILASQWAGIANIQQGKQDEGLVHLERVASLKEPEDPKS KVHYFDGLILLASALYDGGRKSEALTYARLAVAYNPTKYNKFLEMCENSEDNLVIDLVSSRRRDY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44370			Membrane insertion protein, Ox...		Lus10026414 [exp]	0	1
AT5G43680			unknown protein		Lus10040152 [exp]	2.4	0.8693
AT2G40090		ATATH9	ABC2 homolog 9 (.1)		Lus10040196 [exp]	3.5	0.8880
AT4G16280		FCA	RNA binding;abscisic acid bind...		Lus10029574 [exp]	7.5	0.8444
AT5G14610			DEAD box RNA helicase family p...		Lus10014553 [exp]	10.0	0.8717
AT4G16280		FCA	RNA binding;abscisic acid bind...		Lus10006304 [exp]	13.2	0.8529
AT4G26300		EMB1027	embryo defective 1027, Arginyl...		Lus10034982 [exp]	15.9	0.8656
AT2G44880			Pentatricopeptide repeat (PPR-...		Lus10003422 [exp]	16.7	0.7878
AT2G18770			P-loop containing nucleoside t...		Lus10013024 [exp]	18.2	0.7615
AT1G71800		CSTF64	cleavage stimulating factor 64...		Lus10017923 [exp]	27.9	0.8200
AT4G33650		APEM1, DRP3A, A...	ABERRANT PEROXISOME MORPHOLOGY...		Lus10012076 [exp]	31.5	0.8281

Compare expression of checked genes

Lus10026414 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.