Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47890 412 / 5e-127 AtRLP7 receptor like protein 7 (.1) AT3G11010 393 / 7e-121 AtRLP34 receptor like protein 34 (.1) AT1G45616 378 / 2e-114 AtRLP6 receptor like protein 6 (.1) AT4G13920 372 / 2e-113 AtRLP50 receptor like protein 50 (.1) AT3G11080 366 / 1e-110 AtRLP35 receptor like protein 35 (.1) AT3G05660 364 / 2e-110 AtRLP33 receptor like protein 33 (.1) AT2G15080 348 / 8e-104 AtRLP19 receptor like protein 19 (.1.2) AT5G25910 344 / 1e-103 AtRLP52 receptor like protein 52 (.1) AT2G32680 345 / 2e-103 AtRLP23 receptor like protein 23 (.1) AT3G05650 344 / 3e-103 AtRLP32 receptor like protein 32 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042239 [exp] 1658 / 0 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10003389 [exp] 1077 / 0 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10003387 [exp] 891 / 0 AT1G47890 394 / 3e-120 receptor like protein 7 (.1) Lus10016402 [exp] 748 / 0 AT1G47890 313 / 4e-94 receptor like protein 7 (.1) Lus10019693 [exp] 707 / 0 AT2G33050 295 / 1e-91 receptor like protein 26 (.1) Lus10004310 [exp] 704 / 0 AT2G33060 358 / 6e-111 receptor like protein 27 (.1) Lus10006825 [exp] 668 / 0 AT1G47890 377 / 6e-114 receptor like protein 7 (.1) Lus10004313 [exp] 622 / 0 AT2G33060 335 / 5e-103 receptor like protein 27 (.1) Lus10002215 [exp] 508 / 3e-169 AT4G20140 202 / 7e-56 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G120600 [exp] 943 / 0 AT1G47890 441 / 7e-137 receptor like protein 7 (.1) Potri.016G120532 [exp] 665 / 0 AT1G45616 325 / 9e-98 receptor like protein 6 (.1) Potri.001G128400 [exp] 664 / 0 AT1G45616 498 / 2e-159 receptor like protein 6 (.1) Potri.001G437700 [exp] 533 / 7e-173 AT1G47890 397 / 4e-122 receptor like protein 7 (.1) Potri.016G126900 [exp] 512 / 7e-165 AT1G45616 510 / 5e-165 receptor like protein 6 (.1) Potri.016G127000 [exp] 494 / 4e-158 AT1G47890 588 / 0.0 receptor like protein 7 (.1) Potri.016G127101 [exp] 485 / 1e-154 AT1G47890 580 / 0.0 receptor like protein 7 (.1) Potri.012G027600 [exp] 487 / 9e-154 AT1G71400 395 / 1e-121 receptor like protein 12 (.1) Potri.011G021400 [exp] 452 / 8e-142 AT3G11080 375 / 2e-114 receptor like protein 35 (.1) Potri.012G009200 [exp] 449 / 8e-141 AT1G45616 386 / 7e-118 receptor like protein 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10026415 pacid=23156410 polypeptide=Lus10026415 locus=Lus10026415.g ID=Lus10026415.BGIv1.0 annot-version=v1.0 ATGAAATTTCAGCTACTTGCATTCTCAATACTGATCCTAGTTGGTACCCTTGTTAGCTTGGTCTCTGGCCGATGTCAGGGTGACCAACATTCGCTTCTGC TCCAACTAAGGCAACGCCTCGTTTTCGACCAACGCTACTCTGCAAAATTGTCAGGGTGGAATGCCAGCACCGACTGTTGTACTTGGCCCGGCATTACTTG CGATCATGGTGGTCTCGGCCAAGTTATTGTCCTTGACTTGAGCGATGAATTCATCACTGGAGGACTTAACGATTCCTCGTCTCTCTTTAGACTTCAGTAT CTTCAGACACTGGATATGTCTTTCAACTATTTCCAGACAACTGTTCCAATTAACCTCGCCAACCTCACCAGTTTGAGATATCTAGATTTATCCTGGGCTG GCTTCTTTGGGCAAGTTCCTGCTGCCATCTCTCGGATGACAAGCTTGGTTGGTCTTTATTTGTCATTCCAGGATGACATGGGAAGACCTCTGGAACTCCG CAATCCAAATCTTTCTCAGCTGGTTCAAAATCTCACGCGGCTAGTTGATCTTCTACTTGATTCTGTGGACGTATCTACCCAAGGGAAGGAGTGGTCTAAG GCCTTATCTTCTTCATTGCCGAATCTCGAAGTGTTGAGCATGTCCAATTGTCTCCTTTCAGGCCCTCTTGATCCTTCCCTCTCAAAGCTTCAACATCTCT CGATAGTTGAATTGGATGACAACGACTTCTCTTCACCAGTTCCGGAATCATTTGCATATTTCAGAAACTTGACCAGCCTGAGGATAAGAGATTGCGGGTT GAAAGGAACATTTCCTGCCAAGATACTCCAAATTCCAAGCTTGGAGGTTTTCGACTTGTCTTATAACGCACTTCTTGAAGGACGGTTTCTGGACTTTCCT CAGAATCATTCTATGAAGACTATCATACTGAGTTACACAAGCTTCTCCGGTGTGTTGCCTCCATCAATTGGCAGCCTTAGCCAGTTATCGCGTATAGAGC TTGCACACAGCCATTTCAGTGGCATGGTCCCGAAGACGTTGGAAAGACTGATTGAACTGGAGTATTTAGATATCTCATTCAACAATTTCACAGGCCTGCT TGCATCACTGGACTTGTGCAAGAATCTCGTGCATGCAGACATTTCTCACAACCAGCTAGCAGGTACTATACCCACTCACTTGGAAAGTTTTGAAAAACTT GTCTCTGTTGACTTGAGCCATAATTCTTTCAACGAAACCATCCCTTCATCCTTATTTGCTAGTCCGTACTTGGAGCATATTGATCTCTCATTTAACCAAC TTCGAGGTGAGGCTCCTGAGTTCCCAAACGTCTCCGCTCTAATATTTTTGGATTTGAGCAACAATAACCTTGAAGGTCCCGTCCCTAGTTCTTTTTTCGA ACTTTCAACCGTTCAAGTCCTCTATCTTCATTCCAATAATTTCACTGGAAGTTTACAATTCAGCTCGATTCAGAGGCTGCAAAATCTCACCAACCTTGAT CTTTCATACAACAACTTGACCGTGGACGTACGTGGCAACAACTCTCCCGATATGTCCAGCTTTCCTCAAATTTCCGAATTACGTATGTCATCCTGCAATT TGAGGGTATTTCCTAAGTTGGGAAACCTATCATTGCTAACATATCTTGATCTTTCAGACAACGACATCAATGGGGTGGTACCTCGTTGGATTCTAGAATC AACAAGCCTATACTATCTAAATCTTTCTCACAACAACCTAGTGGGCCTCCAGCTACAATCTGTTTCTCTTCCCCGTCTTAATGTCTTGGACATACACGAC AATCAATTTCAAGGTGATATTCCGATCATACAATCATCACCCTTTCACATTGATTATTCTTACAATCTTTTCAATGGTTCCATTCCAACTACATATAAAG CTCGAAATTTCCACTCTTGGGCGAACTTCTTTTCACTGTCCAACAATCGGCTCGAAGGACCTATTCCTGCAAGTATTTGCAAGAATCCAAATCTTGAAGT CCTTGATTTTTCAAACAACTACTTCAACGACACCATTCCAGATTGTTTAGCAAGGCATAATTGGCTTGCTGTTCTAGATTTGAGGGGCAATAAGCTCAGT GGCGACATACCTGACACATTTCAAGCTTCTTGTTCCTTAAAGACTCTTGATCTCAGTAGGAACAAATTCAAAGGAAGGGTTCCAAAGTCGCTGGAGAATT GTACAGAGTTGGAAGTTTTGGACATTGGAAACAACAAAATATCAGATGTCTTTCCTTGTCTTCAAACAATCAAACCCAACTTGCGTGTCCTTATCATGAG AAACAATCTCTTCCATGGGAGCATTGGGTGTCCACATTCTCCTGGTACTTGGAAAAAGCTGCAGATTGTAGACCTTGCAATCAACAATTTTTCTGGTCCC TTGAATGCCGAATACTTTGCTACCTGGGAAAACATGATGATAGGTGCAGAAGGAATGCACGATCACCTCGAATATAAATCTTTTAACAACACTGATTATG AAGTTTCCATAACTGTTAGCAGCAAGGGCCTCCAAAGGGAATTTGTGAAGATTCTGAAGGTATTCAAGTCCATTGATTTCTCGAGCAACAATTTCGATGG CCAAATACCACAAGTCATAGGAAAATTCAGAGCACTTCAGGTCCTTAATTTATCTCACAATGATTTTACTGGTAACATCCCATCAGCTTTTGGAGATCTG TCAAACATGGAGTCTCTGGATCTCTCTCATAACAAGCTCAAAGGACATATCCCAGAGGAGCTAACAGGAATGAAATTCCTCGAAGTCCTCGACCTATCGG ATAACAATCTAGTTGGGAGAATCCCAACTGGCAATCAATTCCAAACATTTGACAACACTTCATTTGGAGGTAACCCAGATTTGTGCGGAATACCTTTAGC CAAAAATTGCACTCCAAGTTCACCAGTTCACGGAGATGTAACAATTAGCCATGAGAATCATTCTTCAAGAGTTGATTGGGAGGTGTTAAGCATGACATTT GGATATGTTTTTGGCTTAGGAGCTCTAATGTTACCCGCTGCGTTATGGTCCAGTTTCCGGATTTGGTATTGGCCAAAGGTTGACTATTTGCTTGTTTGGA TGTTTCCAAAGTTATATACGAAGGATTGGAATAATCGTCTTGTTCGAACGCAAGAAAAGAAGAGTATAATCAATGATGGTAAAGCCAATAACTACCACAT GTAA
AA sequence Show only first row Show all	>Lus10026415 pacid=23156410 polypeptide=Lus10026415 locus=Lus10026415.g ID=Lus10026415.BGIv1.0 annot-version=v1.0 MKFQLLAFSILILVGTLVSLVSGRCQGDQHSLLLQLRQRLVFDQRYSAKLSGWNASTDCCTWPGITCDHGGLGQVIVLDLSDEFITGGLNDSSSLFRLQY LQTLDMSFNYFQTTVPINLANLTSLRYLDLSWAGFFGQVPAAISRMTSLVGLYLSFQDDMGRPLELRNPNLSQLVQNLTRLVDLLLDSVDVSTQGKEWSK ALSSSLPNLEVLSMSNCLLSGPLDPSLSKLQHLSIVELDDNDFSSPVPESFAYFRNLTSLRIRDCGLKGTFPAKILQIPSLEVFDLSYNALLEGRFLDFP QNHSMKTIILSYTSFSGVLPPSIGSLSQLSRIELAHSHFSGMVPKTLERLIELEYLDISFNNFTGLLASLDLCKNLVHADISHNQLAGTIPTHLESFEKL VSVDLSHNSFNETIPSSLFASPYLEHIDLSFNQLRGEAPEFPNVSALIFLDLSNNNLEGPVPSSFFELSTVQVLYLHSNNFTGSLQFSSIQRLQNLTNLD LSYNNLTVDVRGNNSPDMSSFPQISELRMSSCNLRVFPKLGNLSLLTYLDLSDNDINGVVPRWILESTSLYYLNLSHNNLVGLQLQSVSLPRLNVLDIHD NQFQGDIPIIQSSPFHIDYSYNLFNGSIPTTYKARNFHSWANFFSLSNNRLEGPIPASICKNPNLEVLDFSNNYFNDTIPDCLARHNWLAVLDLRGNKLS GDIPDTFQASCSLKTLDLSRNKFKGRVPKSLENCTELEVLDIGNNKISDVFPCLQTIKPNLRVLIMRNNLFHGSIGCPHSPGTWKKLQIVDLAINNFSGP LNAEYFATWENMMIGAEGMHDHLEYKSFNNTDYEVSITVSSKGLQREFVKILKVFKSIDFSSNNFDGQIPQVIGKFRALQVLNLSHNDFTGNIPSAFGDL SNMESLDLSHNKLKGHIPEELTGMKFLEVLDLSDNNLVGRIPTGNQFQTFDNTSFGGNPDLCGIPLAKNCTPSSPVHGDVTISHENHSSRVDWEVLSMTF GYVFGLGALMLPAALWSSFRIWYWPKVDYLLVWMFPKLYTKDWNNRLVRTQEKKSIINDGKANNYHM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Lus10026415 [exp]	0	1
AT3G47570			Leucine-rich repeat protein ki...		Lus10032306 [exp]	1.0	0.9598
AT3G47570			Leucine-rich repeat protein ki...		Lus10011387 [exp]	2.4	0.9248
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Lus10042239 [exp]	2.4	0.8795
AT4G08850			Leucine-rich repeat receptor-l...		Lus10019036 [exp]	3.5	0.9233
AT5G05190			Protein of unknown function (D...		Lus10029013 [exp]	4.0	0.8588
AT4G08850			Leucine-rich repeat receptor-l...		Lus10019035 [exp]	4.0	0.9116
AT2G17040	NAC	ANAC036	NAC domain containing protein ...		Lus10022636 [exp]	7.7	0.8892
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10034279 [exp]	9.9	0.8558
AT2G15080		AtRLP19	receptor like protein 19 (.1.2...		Lus10039512 [exp]	12.6	0.8535
AT3G47570			Leucine-rich repeat protein ki...		Lus10011386 [exp]	13.0	0.8356

Compare expression of checked genes

Lus10026415 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.