Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042237 [exp] 358 / 3e-117 AT4G27595 44 / 5e-04 Plant protein of unknown function (DUF827) (.1) Lus10026417 [exp] 234 / 3e-72 ND / Lus10016424 [exp] 170 / 1e-47 ND / Lus10004306 [exp] 152 / 2e-42 ND / Lus10019211 [exp] 151 / 6e-42 ND / Lus10003449 [exp] 151 / 4e-41 AT2G02360 102 / 4e-24 phloem protein 2-B10 (.1) Lus10029181 [exp] 149 / 4e-40 ND 39 / 0.008 Lus10019691 [exp] 148 / 1e-39 ND / Lus10000475 [exp] 143 / 1e-37 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026416 pacid=23156580 polypeptide=Lus10026416 locus=Lus10026416.g ID=Lus10026416.BGIv1.0 annot-version=v1.0 ATGGCTCCCTTCAATTTCAAGTCCTGCAATCACTTTGTTGCTTCCTCCGACGGAACTACTCTCCAGGTCCACGACTTGACCACCAATCATATGGTTCAGC CTCATTGGAATCAAGTTGCCAACATCAATTTGATCAGTATTCTCGAAGATGACGATGAGGAAACAGAGCAAATCTCCTACGATGGGCTACTGTTCTTCGA TGGTTATGGCAGAATCGAGGGAAATAAAGCGTTAGCATTGCTAGCCCAACATCTGAAGCGCCTACGCTTGTTGGTCAACCCTGAAGGTTACTGTTTTCAG GAATCCGTGGAGCTTGCTGATTATGCTGATTTCGGAATTCATTATCTTCGACTCAACGATCTGTTCAGCTGGCCCCACCACGGTGTCTATTTGGCGACCA CGACTATATGGGGCCGGTCGGAGTTGAAATATCACGTGCCAAAACCGAAGCGAACTTCGACTGCTGATCATCGTCATCATGATCATGGGGTTGATAACTT GCAGAAGAAGTTAGAGGAGTTGAAAAGGCTGTTGAAAGAGAAAGAGGAGGAACTCGAGAAGGCGGATGAGGCGAAAGATGAAGAATTGAGGAAGCTAAGG AAGGAGAAAGATGAAGAGATAAAGGTGCTGAGGAAGAAGAAAGATGAAGATAAAGCAAAGGTTAGAAAAACAGAGGAAGCTTTGGAGAAGCTGAAAGTGG AGATGGAGGATGTGAAGGAGGAGCTGCAGAGGATTCTAAAACTACGTGAGCAAAATGGCAGAGTGGATATACAATCAGCAAGAAGGATTGAAGAACTACA CAAACAAAAGGATGAAGAGTTACAGAAGATAATTCGAGAAAAAGATGATGAAATTGTAAAAGTTAAAAAAGATTTGGAGGAGCAAGCTGGTTCTAAAATA GAAAAGATAACTCAAGAGAAGGATGAAGAGTTACAGAAGATAATTCGAGAAAAAAATGATGAAATTGCAAGAATAAAAAAAGATCTGGAGGAGCAAGTTG GTTCTAAGATGGAGAAGATAACTCAAGAGAAGGATGAGGAGCTGCAAAAGATAACTCGAGATAAAAATGATGGAATTGTAAGAATCAAGAAAGATTTGGA GGAGCAGAGATCTAGACTGGAGAAGACAATTTGA
AA sequence Show only first row Show all	>Lus10026416 pacid=23156580 polypeptide=Lus10026416 locus=Lus10026416.g ID=Lus10026416.BGIv1.0 annot-version=v1.0 MAPFNFKSCNHFVASSDGTTLQVHDLTTNHMVQPHWNQVANINLISILEDDDEETEQISYDGLLFFDGYGRIEGNKALALLAQHLKRLRLLVNPEGYCFQ ESVELADYADFGIHYLRLNDLFSWPHHGVYLATTTIWGRSELKYHVPKPKRTSTADHRHHDHGVDNLQKKLEELKRLLKEKEEELEKADEAKDEELRKLR KEKDEEIKVLRKKKDEDKAKVRKTEEALEKLKVEMEDVKEELQRILKLREQNGRVDIQSARRIEELHKQKDEELQKIIREKDDEIVKVKKDLEEQAGSKI EKITQEKDEELQKIIREKNDEIARIKKDLEEQVGSKMEKITQEKDEELQKITRDKNDGIVRIKKDLEEQRSRLEKTI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52410			unknown protein		Lus10026416 [exp]	0	1
AT5G05340			Peroxidase superfamily protein...		Lus10000346 [exp]	2.4	0.8720
					Lus10014817 [exp]	3.5	0.8822
AT1G18010			Major facilitator superfamily ...		Lus10009416 [exp]	4.0	0.8282
AT2G30140			UDP-Glycosyltransferase superf...		Lus10042263 [exp]	10.8	0.8377
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Lus10027567 [exp]	13.6	0.8121
AT1G62640		KAS III, KASIII	3-ketoacyl-acyl carrier protei...		Lus10024608 [exp]	20.5	0.7896
AT1G22990		HIPP22	heavy metal associated isopren...		Lus10036004 [exp]	41.2	0.7954
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10004163 [exp]	44.0	0.8446
AT2G18570			UDP-Glycosyltransferase superf...		Lus10041713 [exp]	45.6	0.8329
AT2G30150			UDP-Glycosyltransferase superf...		Lus10042262 [exp]	54.5	0.8055

Compare expression of checked genes

Lus10026416 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.