Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042237 [exp] 427 / 1e-141 AT4G27595 44 / 5e-04 Plant protein of unknown function (DUF827) (.1) Lus10026416 [exp] 323 / 2e-106 AT5G52410 42 / 0.001 unknown protein Lus10016424 [exp] 185 / 5e-52 ND / Lus10004306 [exp] 176 / 5e-50 ND / Lus10019691 [exp] 179 / 9e-50 ND / Lus10029181 [exp] 176 / 1e-48 ND 39 / 0.008 Lus10003449 [exp] 174 / 3e-48 AT2G02360 102 / 4e-24 phloem protein 2-B10 (.1) Lus10019211 [exp] 171 / 3e-48 ND / Lus10004308 [exp] 167 / 4e-47 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026417 pacid=23156504 polypeptide=Lus10026417 locus=Lus10026417.g ID=Lus10026417.BGIv1.0 annot-version=v1.0 ATGGCGCCCTTTGATTTCAAGTCCACCAATCACTTCGTCGCTTCCTCCGACGGAACTACTCTCCAAATCTACAACTTGATGGCCAAGGCTATGGTTCATC CTTTCTCCATCCGTAAGGCTCACTGGGAGGAAGTTGCCAACATCAACATGATCACTCTCGAAGATGATGATGATGACGATGAGGAAACACAGCAAATCTC ATACGACGGGCTGCTCTTCTTCGACGGCCACGGCAGAATCGAGGGAACCAAAGCGGTGACCGTGCTAGCCCAACATCTGAAGCGCCTGCGCTTGTTGGTC AACCCTGAAGGTTACTGTTTCCAAGAATCTGTGGAGCTTGCTGATTTCGGGATTCACTACCTTCGACTCAACGATCTGTTCAGTTGGCCCCACCACGGGG TCAATTTGGCTACGACCTCTGTGTGGGGCCGGTCGGAGTTGAAATATCAGGTGACGAAACCGAAACCAACGACGACTGCTGATCATCATCATGAACATGG GGCTAATCACTTGCAGAATAAGTTAGAGGAGTTGAAAAGGCTGTTGAAAGAAAAAGAGGATGAGCTCGAGAAGGCGGATGAGGTGAAGGATGAAGAATTG GAGAATTTGAGGAAGGAGAAAGATGAAGAGATGAGAGTGTTGAGGAAGAAGAAAGATGAAGAGAAGGTTAAAGCAAGAAAAGCAGAGGAAGCTCTGGAGA AGCTGAAAGAAGAGATAGAGGATTCGAAGGAGTCCAAAGATGAAGAGATGGAGCAGTTGAGAAAGCAGTTGAAAAGGAAGGATGAAGAAATGAGGATTCT TAAAAGGAAGAAGGATAAAGATCAGGAAGCGAATTCGAAGAGGATCGACGAACTCGAGAAGCTGAAAGAGGAGATGGAGGATGCGAACGAGGAGCTGCGG AGGTCTCTAAAACTTCACGAGCAGAATGGAAAAGTGGATATAAAATCAACTAGGAGGATTGCAGAACTGGAGAAGCAAAAGAATGAGGAGCTGGAGAGGA TAACTCGAGAGAAGAATGATGAAATTGCACGAATCAAGAAAGATTTGGAGCAGTGTTCTAAAGTTTCATGGGCAATTTCGCCTTCGGTTAGATACCTTCC AAAGGGTGCAGAAGGCGAAAGGGTACACCTAACCAGAAGGCGAAGGGTTCCGCCTGAAACGTTTGTCTATACCGAACAATCGTATGATTTTGTGAGCAGT AATATGCCGAGAATAGAGGCTTGTCTCAATGTGTTCAACACTGCTCAGTTCGTTGACGAGGACAGTACAGGGTGGCCTAACCCGACTTCTTTCAATGTAC TTATCGGCAGTAGCAACAGAGGGTTCGATAGAAACAACTGGTGGTTTGCCAAGACTGACCACCCTGAAGGCGGATTGACGATGTTGGCTTACTACGACGG GAGTTTCTCTCAGTTTAGTTCGGGTCCTGATCGTACAATTCGGTTGCCGTTTCATAAAGATGCTAGCCTTGCACCTTATAAGCCATTCTTCCTACTCAAT GTGCATTCGTTTGGGGTGAAGTTGGCTTTCATGTATAGAGTTTAG
AA sequence Show only first row Show all	>Lus10026417 pacid=23156504 polypeptide=Lus10026417 locus=Lus10026417.g ID=Lus10026417.BGIv1.0 annot-version=v1.0 MAPFDFKSTNHFVASSDGTTLQIYNLMAKAMVHPFSIRKAHWEEVANINMITLEDDDDDDEETQQISYDGLLFFDGHGRIEGTKAVTVLAQHLKRLRLLV NPEGYCFQESVELADFGIHYLRLNDLFSWPHHGVNLATTSVWGRSELKYQVTKPKPTTTADHHHEHGANHLQNKLEELKRLLKEKEDELEKADEVKDEEL ENLRKEKDEEMRVLRKKKDEEKVKARKAEEALEKLKEEIEDSKESKDEEMEQLRKQLKRKDEEMRILKRKKDKDQEANSKRIDELEKLKEEMEDANEELR RSLKLHEQNGKVDIKSTRRIAELEKQKNEELERITREKNDEIARIKKDLEQCSKVSWAISPSVRYLPKGAEGERVHLTRRRRVPPETFVYTEQSYDFVSS NMPRIEACLNVFNTAQFVDEDSTGWPNPTSFNVLIGSSNRGFDRNNWWFAKTDHPEGGLTMLAYYDGSFSQFSSGPDRTIRLPFHKDASLAPYKPFFLLN VHSFGVKLAFMYRV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10026417 [exp]	0	1
AT2G02360		ATPP2-B10	phloem protein 2-B10 (.1)		Lus10003449 [exp]	2.4	0.9128
					Lus10003450 [exp]	5.0	0.8861
					Lus10016424 [exp]	7.2	0.8962
					Lus10026056 [exp]	8.5	0.9294
AT4G36670		AtPMT6, AtPLT6	polyol/monosaccharide transpor...		Lus10041731 [exp]	13.6	0.9091
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10000611 [exp]	16.9	0.9184
					Lus10019190 [exp]	18.1	0.9030
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10016104 [exp]	19.7	0.8619
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10017208 [exp]	21.0	0.8998
AT3G11480		BSMT1, ATBSMT1	S-adenosyl-L-methionine-depend...		Lus10036550 [exp]	21.2	0.8913

Compare expression of checked genes

Lus10026417 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.