Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58410 1518 / 0 HEAT/U-box domain-containing protein (.1) AT1G67856 45 / 6e-05 RING/U-box superfamily protein (.1) AT5G41400 44 / 0.0002 RING/U-box superfamily protein (.1) AT3G51325 42 / 0.0002 RING/U-box superfamily protein (.1) AT5G05530 43 / 0.0007 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042236 [exp] 3132 / 0 AT5G58410 1695 / 0.0 HEAT/U-box domain-containing protein (.1) Lus10006493 [exp] 45 / 0.0005 AT3G16720 221 / 5e-71 TOXICOS EN LEVADURA 2 (.1) Lus10027736 [exp] 42 / 0.0009 AT4G17905 89 / 8e-22 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G126000 [exp] 2026 / 0 AT5G58410 1781 / 0.0 HEAT/U-box domain-containing protein (.1) Potri.003G184800 [exp] 45 / 0.0001 AT2G37580 120 / 6e-34 RING/U-box superfamily protein (.1) Potri.008G219200 [exp] 45 / 0.0003 AT3G16720 197 / 2e-61 TOXICOS EN LEVADURA 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10026420 pacid=23156561 polypeptide=Lus10026420 locus=Lus10026420.g ID=Lus10026420.BGIv1.0 annot-version=v1.0 ATGGGGAAGCAAAAGGGAGACAGCGGCAGGAGCAAGAACCGCCCGTCTAGCAGCAGTCTAGCAGCTTCTCTGCTGCCTTCGGGTTCTTCTGCAGCAGCCG TGGGATTTGGCGGCTTTGTCGGGAGCTCTCGCTTTGATTTTCCAGTGTCAGGCGACGACTCTGCTCCTTTTCTGGACGAGGACAGTGAAGTTGCTCAACA CATAAAGAGGCTCGCGAGGAAGGATCCCGTTACCAAGCTTAAAGCACTGCAAGCATTGTCTGCTCTATTCAAAGTTAAGTCTGGAAAGGATATGGCATTG ATTATACCGCAATGGGCTTTTGAATATAAGAGGTTGTTGATGGACTACAATAGAGAAGTTCGGCGAGCAACGCACGAAACCATGACGAATCTTGTTGTTA CCATTGGGCGAGATATAGCTCCATATCTCAGGACTTTGATGGGACCGTGGTGGTTTTCACAATTTGATCCAGTTTCTGAAGTTTCTCTTTCTGCAAAGCG ATCATTGCAGGCAGCATTTCCAGCACAAGAGAAAAGATTAGATGCTTTCATTTTATGCACAACGGAGATATTTATGTATTTGGAAGAAAATTTGAAGTTG ACACCACAAAGTCTGTCAGATAAAGCTGTGGCTTTAGACGAATTGGAGGACATGTACCATCAGGCAGTCGCTTCCACTTTGCTCGCATTAGCAACACTTA TCGATGTTTTATTTAGCTTGCAATCTGAAACAACTGGCCTGGAAAACGTTGCAGCTGAACCAAGAAATGCCTCAAAGGCTAGGGCAACTGCTATTTCTTT TGCTGAGAAGCTGTTCTCTGGGCACAAATATTTTCTAGACTTTCTTAAGTCACAAAACTCAGCAGTTAGGACAGCTGCATATTCTACACTGACGAGCTTC ATTAAAAGTGTTCCTCATGTTTTCAACGATCAAAATATAAAAACAGTAGCTGTTGCTGTACTTGGTGCTTTCCAAGAGAAGGATCCTGCTTGTTATTCAT CAATTTGGGACACAGTATTATTATTTTCAAAAAGATTCCCTGACAGCTGGACGATAATTAACGTTCAAAAGAATTTCCTCGGCCGGTTTTGGAATTTCCT AAGGCATCAATGTTTTGGTTCGCAGCAAGTCTCTTATCCTGCGTTGATTCTTTTTCTGGAAGCCGTGCCTTCCAATGTAGCAGCAGGAGAGAGGTTCTTC CTTGAATTTTTCCAAAACCTATGGGATGGCAGGAACCCGTTGCGTTCAGCTGTAGCTGATCGTTTGGCATTCTTCAAGGCCTTTAGGGAGTGCTTTCTTT TTGCATTGCAGAATGCACCCAGATATTGCCATGGGGTTGATTCTATACTGAAATTTCGAGTTACCCTTGTTGAAGAAGTCCTCGTACAACTTCTGTGGCA TGATTACCTTTTTTCTGGAGGATCCAGTGGTCAAGATGCTGGGTCTTTTGTTAAGAACACAACAGGGTCAGTAAACCTGAAATATCCTTGGAGTTACTTG CAAGAATTGGGGAAGTGCATTACAGAAATTCTTTCTGAAAGCTATTTAATAGAATATGATGTGCTTTCAACTTACTCTGCGGCATTTCGGGAGGATTCTG TAAGCCTGTTTCAGAAAACAGTAAATGTTTCAGAAAGAGCAGAATGTGTTGATCGAATCATCAAGTTTCTGTCATTACTAGAGCAGCATTCAGTTCAGAA AGGTGAAGATTGGCCCTTGGTTCAGTTAGTAGGACCAATGTTGGCTAACTCATTCCCATTGATAAAATCTTTTGATGTGCCAGATGGCATAAAGCTTCTA TCAGTGGCAGTTTCAATTTTTGGTCCACAAAGAACTCTCCACCAACTTTTCATCCGTAGCAATGGGAGTCCTTTCAGTGCCAATCCTGGTGAAAAGGACC ATGAGTTGGCGCATTTCATGCAAGTATTCAGTGAGACATTTGTTCCATGGTGTTTATCTGGCCACAGTTCCTCAATCAATACTCGACTTGATTTGTTACT TGAATTGCTAAATGATGAATCTTTTCCCAAGCAATGGGACATAATTGTTTCATATGTGATTAATCAAACAAATGGAAGTGGTAGAATCGAGGCTGGGACC CTGGAGACAGAAAGGTTGGTTTCATTAGCAATGCTCTTGGATAAAGCGAGAGATGAAATGAAAAGCAAGACACTGACCAGAACTTCTGTTCACCAGCACT TGTATAATCCACAGGCTTGGTTTCACGAGCTTCTAGAGTCAGCTGCAGTTCTTGTTGCCTATTCTCCAATCACATTCACACGTTCTGCTTCTCAGTTTCT GTGTGCTGTTCTTGGGGGATCATGCAATCACAATCAAATATTTTTCGTGTCAAAAAATATAATCACATTGATTGCCAAAGCATTCAACAGAAGATTGCTC TCTTTCATGGCCAAGTCCTCTTTTGAATCAGTTAGAAATTCAGTTTATGTATTAACCGTGGAGACGGATTGTGCTGAAATCGGAAATGAGAGCGCTGTTA ACACAATGGATATGGCTCAATTTTCTCTCGATGTACTTAGTAATAGTTTCTTTTGCCTGAAATCAATATCAGAGGACATTGGACTAGTTTCAGGTATCAT GGCTTCTGTTTTCATCATTAACTGGGAGTTCGAAATGATGACAATGGAAGAACATGCTATTAATGATGAATCAAATGATAAGATGATCGGGAGGAGAGAA GTTTTCCAAGTCACTCATGATCTTTGCCTTAAACTAAAGGATGCATTCTGTGAAAGCCTTCCGGCGAACATTCGAATGCAGATGGGAGACCTTCTGGTTC AGTTTGTCAGGTTGGTCGTTCTTAGGGAATGTAAGCTGACTGTTGGTGTGATTACTTCTTTGGGCTGCTCTTGGATGGAAGAACTCCTTGCTTGTCTGTG CATTGATCAACCCGAGGAACAGAATTTACTTGACCAGCTGTTAAGCAAGGATCAGACTTGGCCTTCATGGATCGTTGCAGATTTTACGGTTGGAAGTACC TCAAATAAGTTAAATATGGAAAACGATACTTACGTATCTGGCAATGTCAAGTTTGTTTCTTTAATTGACAAGCTTATCAAGAGGGTCGGAATCAATAGAG TTCTATGCCTTGATGATGATGGCGATGTCTCATTGAAGGAGCCACTGAAAGAAGAGAGTACTACTCGAGCATGGCTTGCAGCTGAAATGTTATGTACATG GAATTGGATAGAAGGTGATGTTGTTGATTCTTTCTTACCTTCACTGGTTCGATCTACCCAAGGCGGGAATCATCCTCGTGTACACAGTTTACTAGATGGC ATCTTGGACATCCTGCTTAATGGTGCTCTTGTTCAAGGAGGAAGAGGCAGAGTAAGATTGTTAAATTTGTGGCCTGCTTCAAACGGGGAGCTAGGAAAAA TTGAAGAACCATTCTTAAGAGCTTTGTTAACTTTGGTTGTTACTTTGTTTAATGATGGTATATGGGGAAGAGACAAAGCTCTGGAGCTGTTTGAGCTTCT CATAACAAAGCTGTACATTGGAGAATCAGTAAATGCCAATTGCTTAAAAATTCTTCCCTCGGTCATTAATGTTCTTATACAGTCAGTATGTCAAAGTAAT CAACTTGACTTACTAGATCGAAAGCTGCAGGATATGCTGAAAGATTGGTTACATAGGACCCTTATGTTTCCACCTTTAATTGAGTGGACATCTGGACAAG ATATGGAAGAATGGGTTGACCTAGTTATTGCTTGTTATCCTTTGAGCTTAACGCCCTGCTCAAAATCATTGAAGTTGGAGAGAGACATTAGCTCGGAAGA GAAGACGCTTGTACTAGACTTATTCCGCAAACAGAAACACAGGACAATATCAGTAGCTAATCAACTTCCAGTAGTTCGGATATTGCTTTTGGAGTTGCTA GTAATTTCTGTCGGTTATTGCTGGAAACAATTTGCTGAGGATGATTGGGAGTTCTTTTTCTCACAGATTAGGGTCTCTATTCAGTCAGTGGTTGTTATAA TGGAAGAAAGTGCAGAAAGTGTGAATGAAATCTTTTCTGATGGCTCAGCCTCTGAAAGTTTGGATGTTTTGAAGAAGCTGGATGAACTTAGTTTGATTTC CGATGATTCTACTATAAATATTGCTAGCAATGCCTTGGCTTCTTTGTCACTATTCTATGGGGCATTGGGGCTCCAGTCAGGTAAGGATGATTCAAACTCA ATCGTACCGGAGAGATGGAATTCAACAGTTGATAGACTACAAGAGGCTATTCTTCGATTATTTTTCTGTATGGGAATTTCTGAAGCTATTTCAAGTACAT ACAGTGATGAAGCTGCATCCATTGTAGCAAAATCTAGGTGTTGTAATTCCTTATTTTGGCAGTTGGTTGCTTCAAATGTCATCAACTCTTCTCCACAGGC TAGAGAAAGAGCAGTGAAATCTGTTGAATTTTGGGGGTTGAGCATTGGGTCAATCAGTGCCTTGTACACGATTTTGTTTTCCTCTATACCAATCCCAGCT TGGCAGCTTGCTGCCTACGTTGTTCTCTCCACAGAGTCTGTTTCACAACTAGGTGTGGTGAATGATTCCAATCATGCGGCAGATGATGTTTGTGGTGATG ATCAGGAGACTTCTACTCTAGAATTGTCATCGGAGAAAAATGTCAGCTTGCCGGAGGAACTATCCCTCAGAATTGAGAATCTGTCCTATGAGGTCCTTGA AATGGATTTGATGGCCCATGAACGGGTGAATCTATTTCTTTCTTGGTCTTTATTGCTGTCACATCTGGGGTCATTACCAACACAATCTTCTGCTAGAGAG CAATTAGTTCAGTATGTCAAAGGTTCTGGTAACTCGGTAATATTAGATTGCATCTTCCAGCATATTCCTCTTGAAGAGTTCTCCTCACAGATACTTAAGA AGAAAGACGCTAAGCTTCCTCCTGAAGCGTCGGAAGCTGCAAAGGCAGCAGCTAGGGCCATAACTAGTGGCTCGTTATTGTTTGCCATTGAATCATTATG GCCAATTGGACCCGAGAACATGGCTACCCTTGCTGGAGCATTATATGGTTTCATGCTTCGTGTTCTTCCTGCTTATGTTAGAGGATGGTTTTCTGATTTA CGTGACCGTTCAATCTCATCTCTTATTGAATCGTTCACACGATCATGGTGCAGTCCTGCTCTGATTATTAATGAACTGTCTCAGATTAAAAAAACAGACT TTGCTGATGAGAACTTTTCAGTCAGTGTGAGCAAATCTGCCAATGAAGTTGTTGCTACGTATACAAAAGAAGATACAGGAATGGATCTAGTTATCCGTCT TCCTGCAGCGTATCCACTATGTCAAGTTGATGTTGATTGTATGAAAAGTCTGGGCATAAGCAAGGGGAAACAAAGGAAATGGTTAATGTCGATGACGATG TTTGTTCGCAATCAGAATGGAGCTTTAGCCGGAGCGATACGAACATGGAAGAGCAATTTGGATAAAGAGTTCCAAGGTGTGGAGGAGTGCCCAATTTGCT ATAGCGTCATCCACACAGACAACCGCAGCCTCCCTCGACTTGCTTGCCGAACTTGCAAGTACAAGTTCCATTCAGCTTGTCTGTACAAGTGGTTCTCAAC GTCTCACAAATCTTCATGCCCGCTCTGTCAGTCTCCCTTCTGA
AA sequence Show only first row Show all	>Lus10026420 pacid=23156561 polypeptide=Lus10026420 locus=Lus10026420.g ID=Lus10026420.BGIv1.0 annot-version=v1.0 MGKQKGDSGRSKNRPSSSSLAASLLPSGSSAAAVGFGGFVGSSRFDFPVSGDDSAPFLDEDSEVAQHIKRLARKDPVTKLKALQALSALFKVKSGKDMAL IIPQWAFEYKRLLMDYNREVRRATHETMTNLVVTIGRDIAPYLRTLMGPWWFSQFDPVSEVSLSAKRSLQAAFPAQEKRLDAFILCTTEIFMYLEENLKL TPQSLSDKAVALDELEDMYHQAVASTLLALATLIDVLFSLQSETTGLENVAAEPRNASKARATAISFAEKLFSGHKYFLDFLKSQNSAVRTAAYSTLTSF IKSVPHVFNDQNIKTVAVAVLGAFQEKDPACYSSIWDTVLLFSKRFPDSWTIINVQKNFLGRFWNFLRHQCFGSQQVSYPALILFLEAVPSNVAAGERFF LEFFQNLWDGRNPLRSAVADRLAFFKAFRECFLFALQNAPRYCHGVDSILKFRVTLVEEVLVQLLWHDYLFSGGSSGQDAGSFVKNTTGSVNLKYPWSYL QELGKCITEILSESYLIEYDVLSTYSAAFREDSVSLFQKTVNVSERAECVDRIIKFLSLLEQHSVQKGEDWPLVQLVGPMLANSFPLIKSFDVPDGIKLL SVAVSIFGPQRTLHQLFIRSNGSPFSANPGEKDHELAHFMQVFSETFVPWCLSGHSSSINTRLDLLLELLNDESFPKQWDIIVSYVINQTNGSGRIEAGT LETERLVSLAMLLDKARDEMKSKTLTRTSVHQHLYNPQAWFHELLESAAVLVAYSPITFTRSASQFLCAVLGGSCNHNQIFFVSKNIITLIAKAFNRRLL SFMAKSSFESVRNSVYVLTVETDCAEIGNESAVNTMDMAQFSLDVLSNSFFCLKSISEDIGLVSGIMASVFIINWEFEMMTMEEHAINDESNDKMIGRRE VFQVTHDLCLKLKDAFCESLPANIRMQMGDLLVQFVRLVVLRECKLTVGVITSLGCSWMEELLACLCIDQPEEQNLLDQLLSKDQTWPSWIVADFTVGST SNKLNMENDTYVSGNVKFVSLIDKLIKRVGINRVLCLDDDGDVSLKEPLKEESTTRAWLAAEMLCTWNWIEGDVVDSFLPSLVRSTQGGNHPRVHSLLDG ILDILLNGALVQGGRGRVRLLNLWPASNGELGKIEEPFLRALLTLVVTLFNDGIWGRDKALELFELLITKLYIGESVNANCLKILPSVINVLIQSVCQSN QLDLLDRKLQDMLKDWLHRTLMFPPLIEWTSGQDMEEWVDLVIACYPLSLTPCSKSLKLERDISSEEKTLVLDLFRKQKHRTISVANQLPVVRILLLELL VISVGYCWKQFAEDDWEFFFSQIRVSIQSVVVIMEESAESVNEIFSDGSASESLDVLKKLDELSLISDDSTINIASNALASLSLFYGALGLQSGKDDSNS IVPERWNSTVDRLQEAILRLFFCMGISEAISSTYSDEAASIVAKSRCCNSLFWQLVASNVINSSPQARERAVKSVEFWGLSIGSISALYTILFSSIPIPA WQLAAYVVLSTESVSQLGVVNDSNHAADDVCGDDQETSTLELSSEKNVSLPEELSLRIENLSYEVLEMDLMAHERVNLFLSWSLLLSHLGSLPTQSSARE QLVQYVKGSGNSVILDCIFQHIPLEEFSSQILKKKDAKLPPEASEAAKAAARAITSGSLLFAIESLWPIGPENMATLAGALYGFMLRVLPAYVRGWFSDL RDRSISSLIESFTRSWCSPALIINELSQIKKTDFADENFSVSVSKSANEVVATYTKEDTGMDLVIRLPAAYPLCQVDVDCMKSLGISKGKQRKWLMSMTM FVRNQNGALAGAIRTWKSNLDKEFQGVEECPICYSVIHTDNRSLPRLACRTCKYKFHSACLYKWFSTSHKSSCPLCQSPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58410			HEAT/U-box domain-containing p...		Lus10026420 [exp]	0	1
AT4G10320			tRNA synthetase class I (I, L,...		Lus10024041 [exp]	1.0	0.9569
AT5G61140			U5 small nuclear ribonucleopro...		Lus10040524 [exp]	2.0	0.9421
AT4G13750		EMB2597, NOV	NO VEIN, EMBRYO DEFECTIVE 2597...		Lus10016661 [exp]	3.9	0.9048
AT3G20475		ATMSH5	MUTS-homologue 5 (.1)		Lus10021545 [exp]	4.4	0.9004
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10002097 [exp]	5.0	0.9223
AT1G16480			Tetratricopeptide repeat (TPR)...		Lus10033685 [exp]	7.1	0.9030
AT3G13225			WW domain-containing protein (...		Lus10005845 [exp]	7.7	0.8997
AT1G59760		AtMTR4	homolog of yeast MTR4, RNA hel...		Lus10007442 [exp]	7.9	0.9190
AT1G02080			transcription regulators (.1.2...		Lus10042876 [exp]	9.2	0.9213
AT1G02080			transcription regulators (.1.2...		Lus10028176 [exp]	10.4	0.9301

Compare expression of checked genes

Lus10026420 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.