Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30270 149 / 9e-46 Protein of unknown function (DUF567) (.1) AT5G01750 88 / 1e-21 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) AT3G11740 73 / 6e-16 Protein of unknown function (DUF567) (.1) AT1G33840 69 / 2e-14 Protein of unknown function (DUF567) (.1) AT2G14560 68 / 3e-14 LURP1 LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA, Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) AT3G16900 55 / 3e-09 Protein of unknown function (DUF567) (.1) AT3G56180 43 / 4e-05 Protein of unknown function (DUF567) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042235 [exp] 352 / 1e-125 AT2G30270 162 / 6e-51 Protein of unknown function (DUF567) (.1) Lus10002477 [exp] 82 / 5e-19 AT5G01750 218 / 5e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10001255 [exp] 82 / 5e-19 AT5G01750 218 / 5e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10014021 [exp] 80 / 2e-18 AT5G01750 202 / 6e-66 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10022754 [exp] 69 / 3e-14 AT5G01750 214 / 3e-70 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10025253 [exp] 69 / 4e-14 AT5G01750 169 / 4e-53 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10009092 [exp] 65 / 6e-13 AT5G01750 161 / 7e-50 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10019896 [exp] 65 / 8e-13 AT5G01750 169 / 3e-53 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10025254 [exp] 64 / 3e-12 AT5G01750 166 / 1e-51 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G126300 [exp] 211 / 3e-70 AT2G30270 159 / 8e-50 Protein of unknown function (DUF567) (.1) Potri.016G130700 [exp] 72 / 2e-15 AT5G01750 209 / 2e-68 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G130400 [exp] 71 / 3e-15 AT5G01750 181 / 3e-57 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131701 [exp] 71 / 4e-15 AT5G01750 201 / 2e-65 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G130500 [exp] 67 / 1e-13 AT5G01750 218 / 6e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131800 [exp] 67 / 1e-13 AT5G01750 213 / 3e-70 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131850 [exp] 67 / 1e-13 AT5G01750 213 / 3e-70 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131100 [exp] 62 / 1e-11 AT5G01750 154 / 3e-47 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131400 [exp] 57 / 4e-10 AT5G01750 147 / 3e-44 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131300 [exp] 56 / 1e-09 AT5G01750 143 / 7e-43 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [flax] [poplar] Tubby_C PF04525 [flax] [poplar] LOR LURP-one-related
Representative CDS sequence Show only first row Show all	>Lus10026421 pacid=23156422 polypeptide=Lus10026421 locus=Lus10026421.g ID=Lus10026421.BGIv1.0 annot-version=v1.0 ATGGAGGATGGCAACGACTCACCTCCCGTCGCCGCCAACGCAGCCGCTTCTCAGATTCCGGTGGACCTGTTTGTCTCCAAGAATCATCCCGGAGTTCCAC AGGGCAATCTCGGTTTCGCCGATTCCTCTGGGGAGTTACTCTTTCGCGTAGCTCCACTTCCTTCTCCCAAAGCATGGAAATCGAGACAGAGCAAGAAGCT GATTCTCAATTCTTCTGGTAGTCCCTTGATTTCCTTGCACCGCCTCGATAAGGGATCATGGGAAGGTTTTGAAGGAGGTGAGGATACAGAGAAGGAGATG TTATTCAGAGTCCAAAGGACGGTGAATAAGCTCTGCAGAACTGAGTTTGAGGTGTTCCTTGCCGGAGAGAGCTCACAAGATCAGTCGAGCCCGGACTTCA AGGTGAAAGGGTGTTGCTTTCAACGATCCTGCACCATCTATGGTGGTGATTCCATTGTAGCTCAGACTAGTCTGATGTACAAGCTTCACGAGGTTCATGC GAGTAGGAGCAAATTCCGGCTGACAGTGTTTCCAGGGTCCATAGATCACGCACTGGTGGTGGCTTTGGTAGTTGTATTCTTGTCCTGA
AA sequence Show only first row Show all	>Lus10026421 pacid=23156422 polypeptide=Lus10026421 locus=Lus10026421.g ID=Lus10026421.BGIv1.0 annot-version=v1.0 MEDGNDSPPVAANAAASQIPVDLFVSKNHPGVPQGNLGFADSSGELLFRVAPLPSPKAWKSRQSKKLILNSSGSPLISLHRLDKGSWEGFEGGEDTEKEM LFRVQRTVNKLCRTEFEVFLAGESSQDQSSPDFKVKGCCFQRSCTIYGGDSIVAQTSLMYKLHEVHASRSKFRLTVFPGSIDHALVVALVVVFLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30270			Protein of unknown function (D...		Lus10026421 [exp]	0	1
AT3G55770	LIM	WLIM2b	WLIM2b, GATA type zinc finger ...		Lus10034123 [exp]	8.5	0.8377
AT5G38660		APE1	acclimation of photosynthesis ...		Lus10034073 [exp]	15.5	0.8374
AT4G34770			SAUR-like auxin-responsive pro...		Lus10012183 [exp]	18.8	0.8353
AT4G14640		CAM8, AtCML8	calmodulin-like 8, calmodulin ...		Lus10004088 [exp]	20.2	0.8333
AT1G20575		DPMS1	dolichol phosphate mannose syn...		Lus10030748 [exp]	25.6	0.8328
AT4G23885			unknown protein		Lus10001827 [exp]	32.3	0.8294
AT3G16210			F-box family protein (.1)		Lus10018008 [exp]	32.9	0.7166
AT5G65960			GTP binding (.1)		Lus10016687 [exp]	39.2	0.8043
AT4G34800			SAUR-like auxin-responsive pro...		Lus10012182 [exp]	45.2	0.8072
AT2G18390		HAL, ARL2, TTN5...	TITAN 5, HALLIMASCH, ARF-LIKE ...		Lus10026383 [exp]	47.2	0.8281

Compare expression of checked genes

Lus10026421 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.