Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30300 243 / 1e-73 Major facilitator superfamily protein (.1) AT3G01630 199 / 1e-56 Major facilitator superfamily protein (.1) AT1G31470 189 / 1e-52 NFD4 NUCLEAR FUSION DEFECTIVE 4, Major facilitator superfamily protein (.1) AT5G45275 182 / 3e-50 Major facilitator superfamily protein (.1) AT4G19450 182 / 5e-50 Major facilitator superfamily protein (.1) AT4G34950 117 / 8e-28 Major facilitator superfamily protein (.1) AT2G16660 115 / 6e-27 Major facilitator superfamily protein (.1) AT1G80530 87 / 7e-18 Major facilitator superfamily protein (.1) AT5G50630 65 / 6e-11 Major facilitator superfamily protein (.1) AT5G50520 65 / 6e-11 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015469 [exp] 268 / 2e-82 AT2G30300 396 / 5e-133 Major facilitator superfamily protein (.1) Lus10042234 [exp] 216 / 1e-67 AT2G30300 116 / 3e-31 Major facilitator superfamily protein (.1) Lus10015470 [exp] 228 / 2e-67 AT2G30300 351 / 2e-115 Major facilitator superfamily protein (.1) Lus10034738 [exp] 186 / 1e-51 AT4G19450 691 / 0.0 Major facilitator superfamily protein (.1) Lus10033271 [exp] 135 / 2e-34 AT4G19450 516 / 0.0 Major facilitator superfamily protein (.1) Lus10019941 [exp] 113 / 3e-26 AT2G30300 307 / 1e-98 Major facilitator superfamily protein (.1) Lus10025053 [exp] 108 / 8e-25 AT4G34950 793 / 0.0 Major facilitator superfamily protein (.1) Lus10034491 [exp] 106 / 5e-24 AT4G34950 788 / 0.0 Major facilitator superfamily protein (.1) Lus10028803 [exp] 103 / 4e-23 AT1G80530 707 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G126700 [exp] 386 / 4e-128 AT2G30300 427 / 4e-145 Major facilitator superfamily protein (.1) Potri.013G154000 [exp] 367 / 3e-121 AT2G30300 380 / 4e-127 Major facilitator superfamily protein (.1) Potri.003G105600 [exp] 197 / 1e-55 AT4G19450 734 / 0.0 Major facilitator superfamily protein (.1) Potri.001G128200 [exp] 196 / 5e-55 AT4G19450 774 / 0.0 Major facilitator superfamily protein (.1) Potri.013G084000 [exp] 170 / 4e-46 AT2G30300 241 / 2e-73 Major facilitator superfamily protein (.1) Potri.004G173400 [exp] 131 / 2e-32 AT4G34950 682 / 0.0 Major facilitator superfamily protein (.1) Potri.009G132700 [exp] 127 / 5e-31 AT4G34950 661 / 0.0 Major facilitator superfamily protein (.1) Potri.005G112400 [exp] 100 / 3e-22 AT4G34950 618 / 0.0 Major facilitator superfamily protein (.1) Potri.006G060900 [exp] 100 / 5e-22 AT1G80530 632 / 0.0 Major facilitator superfamily protein (.1) Potri.003G012300 [exp] 100 / 5e-22 AT1G80530 650 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF06813 [flax] [poplar] Nodulin-like Nodulin-like
Representative CDS sequence Show only first row Show all	>Lus10026422 pacid=23156621 polypeptide=Lus10026422 locus=Lus10026422.g ID=Lus10026422.BGIv1.0 annot-version=v1.0 ATGCCAAGCTCCACCTCCACAAGTAGTACTCTCCGATGGCTAAGCCTGGTCGGAATAATATGGCTCCAATCAGTGAACGGAACCAATACCAACTTCCCAG CCTACTCCTCCCAGCTCAAATCCCTCCTCTCAATCTCCCAGCTCCAGCTCAACAACTTAGCCTTCGCCTCCGACGCTGGCAAGCTATTCGGCTTCCTAGC CGGCTTAGCCGCCCTCCATTTCCCTCTCTGGCTCGTCCTCCTCATCGGCTCGGCTCTCGGGTTACTCGGCTACGGCCTCCAGTACCTCTTCATCACCGGA ACCATCGCTTCCCTCACTTACCCTCAGATTTTCTTACTCACTGTCGTCGCCGGTAACAGCGTCTGCTGGATCAACACCGTAGCCTACGTCGTCGCCATTC GTAACTTCCCCGCCGGAAAGCTCCAGGCTGCTGCCGTCGGCCTTTCGTCTAGCTACCAAGGCCTCAGCGCCAAGATCTACACCGTCTTCGCCTCGGCGTT TTTCTTCTCGTCGGAGAAGAAGAATCCCGCCGAGGCATACTTGCTACTCGGAGCAATCCTCCCTCTCATTGTCTCTGCTGTCGCGGTCCCCACTCTAAAC CGACCAGGGACCACTCAGAGAGGAGGAGGGGCAGCGGTGGTGGCGATGTTTACAATAACCATCGCCACCGGGGTGTACTCCGTGGTGAGCAGCTTGCACT CCGTCGCCGGGGGAATGTCGCCCTCGTGGAGCGCAGTGGGGATCTTGGCGTTTCTCATTGCGCCGGTGGTTGTCCCGGCAGCGGAGAAGGCGAGGGAGTT AATCGGGAACTGTAACTGCAAAGGTAGCAGTACGAGGATTTATACGATCAACGGCGACATGGAAAACGGCGTCGTTGATGTGACAGTGGAGATGGCGGGA AGTAAGGAAGCGGTGGTGATGCGGATGAGCGAGAGCTTGACACGTGGCGTGGGGAAGGAGGGTGACGATGAAGCGACGTCGTGGGAGGAGGAAGTGGGGG TGTGGGAGATGGTTAAGAGGGTTGAGTTTTGGTTGTATTTCGGGGTGTATTTCTGTGGGGCGACGATCGGGTTGGTTTATTTGAATAATTTGGGGCAAAT CGCGGAGTCGGGTGGCGAGTTTTCGGCTTCTTCTTTGGTCTCCTTCTCTTCTTCTTGTGGATTCTTCGGTCGTCTAGTTCCTTCCTTCGTTGACTACTTT CTCCCAAGGAGTGGTAGAAGTAGTAGGTGGTGGAATCAGGCATCAAATGCAGCGTCGATATCAGCATTAATGGCACTAATGGCATCAGCTTTCTTGTTAC TTGTCACAACTCGAACCCCGCAATATCACCTCAGCCTCTACATAGCCACAGGCATCATAGCGGTGAGCACAGGGGCAATAACTTCAATCGCTGTTTCAAC AACCACCCAACTCTTCGGCACCACAAACTTTAGCATCAACCACAACGTTGTGGTCTCCAACATCCCTCTTGGCTCTTTCGCTTACGGCTACCTGGCTGCC TTCATCTATCGTAGGAGTAGTAGCGCTGTTGGTGGCGTTCATGGTGGAGAAGGGATCAAGTGTATGGGTGTGGAGTGCTATTGGGATACGTTTGTGATTT GGGGGTCGCTTTGCGGGTTTGGTGCGGTTCTTGCTCTCGTTCTTCATTGTAGGATGACGAGGACGAAGAGGAGGAAGGGGGGTGGAGGTGAGTTTTCAGA CGGAGGAATATTGACTGATTGA
AA sequence Show only first row Show all	>Lus10026422 pacid=23156621 polypeptide=Lus10026422 locus=Lus10026422.g ID=Lus10026422.BGIv1.0 annot-version=v1.0 MPSSTSTSSTLRWLSLVGIIWLQSVNGTNTNFPAYSSQLKSLLSISQLQLNNLAFASDAGKLFGFLAGLAALHFPLWLVLLIGSALGLLGYGLQYLFITG TIASLTYPQIFLLTVVAGNSVCWINTVAYVVAIRNFPAGKLQAAAVGLSSSYQGLSAKIYTVFASAFFFSSEKKNPAEAYLLLGAILPLIVSAVAVPTLN RPGTTQRGGGAAVVAMFTITIATGVYSVVSSLHSVAGGMSPSWSAVGILAFLIAPVVVPAAEKARELIGNCNCKGSSTRIYTINGDMENGVVDVTVEMAG SKEAVVMRMSESLTRGVGKEGDDEATSWEEEVGVWEMVKRVEFWLYFGVYFCGATIGLVYLNNLGQIAESGGEFSASSLVSFSSSCGFFGRLVPSFVDYF LPRSGRSSRWWNQASNAASISALMALMASAFLLLVTTRTPQYHLSLYIATGIIAVSTGAITSIAVSTTTQLFGTTNFSINHNVVVSNIPLGSFAYGYLAA FIYRRSSSAVGGVHGGEGIKCMGVECYWDTFVIWGSLCGFGAVLALVLHCRMTRTKRRKGGGGEFSDGGILTD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30300			Major facilitator superfamily ...		Lus10026422 [exp]	0	1
AT5G57800		CER3, FLP1, YRE...	FACELESS POLLEN 1, ECERIFERUM ...		Lus10008895 [exp]	1.7	0.9815
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Lus10013546 [exp]	2.0	0.9751
AT5G53390			O-acyltransferase (WSD1-like) ...		Lus10039843 [exp]	2.0	0.9814
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10015138 [exp]	3.0	0.9752
AT5G10770			Eukaryotic aspartyl protease f...		Lus10038732 [exp]	4.9	0.9630
AT3G18950			Transducin/WD40 repeat-like su...		Lus10023836 [exp]	5.8	0.9171
					Lus10020641 [exp]	5.9	0.9637
AT5G57800		CER3, FLP1, YRE...	FACELESS POLLEN 1, ECERIFERUM ...		Lus10023210 [exp]	6.3	0.9602
AT1G67730		ATKCR1, YBR159,...	beta-ketoacyl reductase 1 (.1)		Lus10006249 [exp]	7.1	0.9464
AT5G57800		CER3, FLP1, YRE...	FACELESS POLLEN 1, ECERIFERUM ...		Lus10015499 [exp]	7.5	0.9140

Compare expression of checked genes

Lus10026422 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.