Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30320 458 / 1e-157 Pseudouridine synthase family protein (.1) AT1G76120 120 / 3e-29 Pseudouridine synthase family protein (.1.2) AT1G20370 87 / 8e-18 Pseudouridine synthase family protein (.1) AT1G34150 59 / 3e-09 Pseudouridine synthase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042233 [exp] 886 / 0 AT2G30320 447 / 7e-153 Pseudouridine synthase family protein (.1) Lus10021231 [exp] 91 / 4e-19 AT1G76120 584 / 0.0 Pseudouridine synthase family protein (.1.2) Lus10005641 [exp] 90 / 7e-19 AT1G20370 588 / 0.0 Pseudouridine synthase family protein (.1) Lus10023799 [exp] 46 / 6e-05 AT1G34150 422 / 3e-147 Pseudouridine synthase family protein (.1) Lus10039480 [exp] 45 / 0.0001 AT3G06950 411 / 6e-144 Pseudouridine synthase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G154200 [exp] 602 / 0 AT2G30320 486 / 2e-168 Pseudouridine synthase family protein (.1) Potri.005G247000 [exp] 84 / 6e-17 AT1G20370 560 / 0.0 Pseudouridine synthase family protein (.1) Potri.002G014400 [exp] 83 / 1e-16 AT1G20370 562 / 0.0 Pseudouridine synthase family protein (.1) Potri.002G061650 [exp] 57 / 2e-08 AT1G34150 474 / 1e-165 Pseudouridine synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0649 [flax] [poplar] PseudoU_synth PF01416 [flax] [poplar] PseudoU_synth_1 tRNA pseudouridine synthase
Representative CDS sequence Show only first row Show all	>Lus10026423 pacid=23156473 polypeptide=Lus10026423 locus=Lus10026423.g ID=Lus10026423.BGIv1.0 annot-version=v1.0 ATGCTTTCTATGCGATGCTTGGTTTCCCCATGGCTTATCAAGACCTACCAGAACTCCTTCAAACTTTCACTATTGGGATTATCCTCAAAAGGGAGTTTAC TTGCTTCAGTACGCTGCTGTTGTTCCGAATTTTCTCCAATATCTGCTACTGAAGTTCGACCTGTGTCAACTCCTAGTCAGCATCTTGGTGCCTCTGCTGG AAAATGGGTACCTATTCGTAAGAAAAAGGTCGTTTTGCGAGTTGGCTATGTTGGCACGGACTACAGAGGTCTCCAGAAGCAACACGATGAGCATTCATTG TCTACCGTTGAAGCAGAGCTGGAAAATGCCATATTCAAAGCTGGCGGGATTCTTGAAAGCAATTATGGACATTTGAACAAGGTTGCTTGGGCAAGAAGCA GCCGTACAGATAAAGGAGTACACTCATTGGCAACAACGATTACAATGAAAATGGAGATACCAGAGACTGCATGGAAGGATGATCCTTATGGCATTGCTCT TGCAAGAACTGTTAACTCTTACCTTCCGGATAGCATCAGAATTTTCAGCATCTTACCTGCACAGAAGAACTTTGATCCTAGACTAGAGTGCAACATGCGT AAATATTCCTACCTTCTTCCTGCGGAGATTATTGGTATCAGAAGTCACTCTGATGCAGATGAAATCAGTGAGCACATATCAGACTTCCGGAAGATACTAA ATGCATTTGAGGGGGATCATCCTTTTCACAATTATACAATACGGTCAAAATACAGGAGCCAAATTCGTCGAAACACATTCCCTGAGAAAAATTATCATTT CTCAAAGAGAGACAGAGCATTTATTCAGATAGGAGACCCTGTTAGTGAGGGGAGTGATGAAGAAGAAGGCGTTGATGAGATTGTTCAACTAGATAACTCA AACCAAAATATTGAACCGGTGAAGGATCATCAAAGCTCGGGTCAACTTGTTGCAAGATGGCTACATGAACCTGATGAGAGAGACAGGATAGGTGCATCTC ACTTCAGAAAGATTATCCGATGTTCATGCGGAGAGCTGGAGAAATCTTCCGGATATAATTTCGTTGAGATTTCTATATGGGGAGAGTCTTTCATGCTACA CCAGATCCGAAAAATGGTTGGAACAGCAGTGGCAGTGAAACGTGATCTACTCCCAAGGGACATTCTAACATTATCATTAGCGAAATTCTCAAGGATTGTG CTTCCCCTTGCCCCATCTGAAGTCCTGATTTTAAGGGGCAATAGTTACTCGCTTACAAGAAAATCCCGCGAAGGAACGCGATCAGAAGTGCAGACAATGT CAGAGGCAGAAGAAATTCTCAAGGGAGTCGATGAATTTTATGTTGACAAATTGTTGCCGCAGGTGTCCAAGTTCTTGGACCCGTCTAGCTCTCCATGGTT GGAATGGGTCGAGAAGCTAGATGAACACACACACATTCCAGATGCAGAACTAAATGAGGTCAGGATGGCATGGAAGGCATGGAAGGAAAACTATCATAGC AGACTCAACGTTGCATCTGCAAACTCATGA
AA sequence Show only first row Show all	>Lus10026423 pacid=23156473 polypeptide=Lus10026423 locus=Lus10026423.g ID=Lus10026423.BGIv1.0 annot-version=v1.0 MLSMRCLVSPWLIKTYQNSFKLSLLGLSSKGSLLASVRCCCSEFSPISATEVRPVSTPSQHLGASAGKWVPIRKKKVVLRVGYVGTDYRGLQKQHDEHSL STVEAELENAIFKAGGILESNYGHLNKVAWARSSRTDKGVHSLATTITMKMEIPETAWKDDPYGIALARTVNSYLPDSIRIFSILPAQKNFDPRLECNMR KYSYLLPAEIIGIRSHSDADEISEHISDFRKILNAFEGDHPFHNYTIRSKYRSQIRRNTFPEKNYHFSKRDRAFIQIGDPVSEGSDEEEGVDEIVQLDNS NQNIEPVKDHQSSGQLVARWLHEPDERDRIGASHFRKIIRCSCGELEKSSGYNFVEISIWGESFMLHQIRKMVGTAVAVKRDLLPRDILTLSLAKFSRIV LPLAPSEVLILRGNSYSLTRKSREGTRSEVQTMSEAEEILKGVDEFYVDKLLPQVSKFLDPSSSPWLEWVEKLDEHTHIPDAELNEVRMAWKAWKENYHS RLNVASANS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30320			Pseudouridine synthase family ...		Lus10026423 [exp]	0	1
AT2G13440			glucose-inhibited division fam...		Lus10014348 [exp]	4.9	0.8835
AT2G23390			unknown protein		Lus10038137 [exp]	6.2	0.8812
AT2G39930		ATISA1, ISA1	ARABIDOPSIS THALIANA ISOAMYLAS...		Lus10017149 [exp]	8.1	0.8642
AT1G74600		OTP87	organelle transcript processin...		Lus10002054 [exp]	8.5	0.8622
AT3G20440		EMB2729, BE1	EMBRYO DEFECTIVE 2729, BRANCHI...		Lus10000912 [exp]	10.2	0.8566
AT5G60740		ABCG28	ATP-binding cassette G28, ABC ...		Lus10041325 [exp]	10.2	0.8723
AT2G40770			zinc ion binding;DNA binding;h...		Lus10030512 [exp]	13.0	0.7873
AT5G12130		ATTERC, PDE149	PIGMENT DEFECTIVE 149, TELLURI...		Lus10014022 [exp]	13.4	0.8650
AT2G28070		ABCG3	ATP-binding cassette G3, ABC-2...		Lus10021440 [exp]	13.4	0.8550
AT4G10000			Thioredoxin family protein (.1...		Lus10009466 [exp]	14.7	0.8242

Compare expression of checked genes

Lus10026423 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.