Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06950 312 / 2e-98 ATTIC110, TIC110 ARABIDOPSIS THALIANA TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 110, translocon at the inner envelope membrane of chloroplasts 110 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042231 [exp] 202 / 1e-58 AT1G06950 927 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 110, translocon at the inner envelope membrane of chloroplasts 110 (.1) Lus10042232 [exp] 183 / 4e-57 AT1G06950 142 / 1e-39 ARABIDOPSIS THALIANA TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 110, translocon at the inner envelope membrane of chloroplasts 110 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G127000 [exp] 340 / 5e-109 AT1G06950 1278 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 110, translocon at the inner envelope membrane of chloroplasts 110 (.1) Potri.013G154300 [exp] 329 / 1e-104 AT1G06950 1258 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 110, translocon at the inner envelope membrane of chloroplasts 110 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026424 pacid=23156624 polypeptide=Lus10026424 locus=Lus10026424.g ID=Lus10026424.BGIv1.0 annot-version=v1.0 ATGAATCCCTCTCTACTCTCCGTCGCTCCGGCTTCCTCATCCGCCGCAGCTTCAACGGCGCTTCTCTCACCTTTCCTCATCCCTTCGCGCTCAACTCCAT CGTCTCTCTCCCTGCCATCCCGCCGGCGACTGAGAGTCTCATTTCCTCGTAATTCAGCTGCATCCGCAGTTACCGCCAAGCCATCGGACGAATCAGCTAC ACAGCCGAAGTCTAGTGTGTTTGGAGGGAGGAAGGAGTTGACCGGGATTCAGCCCTTGGTGGATAGCCTTCCGCCGCCGGTGAGGCTAACTTGTTCCGCG GTTATTTTGGCTGGAGCTGTTGCTGCAGGGTATGGATTGGGGCAACGGTTCGGAGGGACTCGCAATTTAGCTATAGGAGGTGCGGCTGCCATGGGTGCAG CCGGGGGAGCTATGGTGTATGCTCTGAATGCTTGTGTTCCTGAGGTTGCAGCTGCGAGTTTGCATAATTACGTTGTTGGCTTGGATGATCCCAAAGGCGT TGAGAAGGATGAAGTTGACCAGATTGTTAAAAAGTATGGTGTGAGCAAAACAGACCAAGCGTTCACTGCAGAACTCTCAGATTTGTACTGCCGATTTGTT TCTTCTGTTCTGCCTCCTGGAAGCCAAGAACTTAAAGGCGATGAAGTTCAAACGATAATCAACTTCAAGAAAGCTTTGGGTATTGACGATCCTGATGCAG CTTCCATGCATCTTGAGATTGGTAGGCGCATTTTCAGACAAAGGCTTGAAACTGGTGATCGTGATGGAGACGCAAAACAACGTAGAGCATTTCAGAAGCT AGTGTATGTTTCAAGTCTTGTCTTTGGTGATGCGTCATCCTTCCTTTTACCTTGGAAGAGAGTGTTTAAGGTTACTGATTCACAGGTGGAAATTGCTATC CGTGATAATGCCCAAAGATTGTACGCTTCAAAACTTAGATCAGTTGGTAGAGGTAAATATGCTTCTGGTTGCGGTTTTCAATATTATCTATTTCATGTTT TCATGCCCTTAATTTAG
AA sequence Show only first row Show all	>Lus10026424 pacid=23156624 polypeptide=Lus10026424 locus=Lus10026424.g ID=Lus10026424.BGIv1.0 annot-version=v1.0 MNPSLLSVAPASSSAAASTALLSPFLIPSRSTPSSLSLPSRRRLRVSFPRNSAASAVTAKPSDESATQPKSSVFGGRKELTGIQPLVDSLPPPVRLTCSA VILAGAVAAGYGLGQRFGGTRNLAIGGAAAMGAAGGAMVYALNACVPEVAAASLHNYVVGLDDPKGVEKDEVDQIVKKYGVSKTDQAFTAELSDLYCRFV SSVLPPGSQELKGDEVQTIINFKKALGIDDPDAASMHLEIGRRIFRQRLETGDRDGDAKQRRAFQKLVYVSSLVFGDASSFLLPWKRVFKVTDSQVEIAI RDNAQRLYASKLRSVGRGKYASGCGFQYYLFHVFMPLI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10026424 [exp]	0	1
					Lus10036489 [exp]	1.0	0.9625
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10042232 [exp]	1.4	0.9518
AT3G11460			Pentatricopeptide repeat (PPR)...		Lus10022703 [exp]	2.8	0.9254
AT1G68552		CPuORF53	conserved peptide upstream ope...		Lus10035017 [exp]	3.5	0.9363
ATCG00180		ATCG00180.1, RP...	DNA-directed RNA polymerase fa...		Lus10009499 [exp]	6.0	0.9318
AT1G71210			Pentatricopeptide repeat (PPR)...		Lus10009626 [exp]	6.9	0.9164
AT2G02750			Pentatricopeptide repeat (PPR)...		Lus10030787 [exp]	7.0	0.9260
AT1G48650			DEA(D/H)-box RNA helicase fami...		Lus10009012 [exp]	7.7	0.9165
ATCG00830		ATCG00830.1, RP...	ribosomal protein L2 (.1)		Lus10001687 [exp]	8.4	0.9204
AT3G46740		MAR1, TOC75-III...	MODIFIER OF ARG1 1, translocon...		Lus10004978 [exp]	10.6	0.9165

Compare expression of checked genes

Lus10026424 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.