Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11890 179 / 5e-55 EMB3135 EMBRYO DEFECTIVE 3135, unknown protein AT1G17620 139 / 1e-39 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT1G65690 64 / 1e-11 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G01410 58 / 6e-10 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G01110 59 / 7e-10 unknown protein AT3G11650 57 / 1e-09 NHL2 NDR1/HIN1-like 2 (.1) AT5G53730 56 / 4e-09 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G36970 56 / 5e-09 NHL25 NDR1/HIN1-like 25 (.1) AT2G46300 54 / 2e-08 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G21130 50 / 4e-07 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024987 [exp] 169 / 2e-52 AT5G11890 87 / 5e-21 EMBRYO DEFECTIVE 3135, unknown protein Lus10037638 [exp] 164 / 3e-49 AT1G17620 201 / 4e-64 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10015622 [exp] 160 / 1e-47 AT1G17620 196 / 5e-62 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10003824 [exp] 151 / 2e-44 AT1G17620 191 / 5e-60 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10010103 [exp] 71 / 3e-14 AT4G01410 198 / 7e-64 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10007364 [exp] 62 / 5e-11 AT1G65690 267 / 6e-90 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10020783 [exp] 57 / 2e-09 AT5G36970 229 / 2e-75 NDR1/HIN1-like 25 (.1) Lus10031888 [exp] 55 / 9e-09 AT1G54540 236 / 2e-78 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10030193 [exp] 55 / 2e-08 AT4G01410 185 / 3e-58 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G052500 [exp] 291 / 3e-99 AT5G11890 198 / 3e-62 EMBRYO DEFECTIVE 3135, unknown protein Potri.006G228600 [exp] 276 / 4e-93 AT5G11890 171 / 4e-52 EMBRYO DEFECTIVE 3135, unknown protein Potri.003G039400 [exp] 177 / 2e-54 AT1G17620 208 / 1e-66 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G200700 [exp] 166 / 2e-50 AT1G17620 168 / 2e-51 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.002G180000 [exp] 73 / 2e-15 AT4G01410 232 / 9e-78 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.014G106100 [exp] 73 / 3e-15 AT4G01410 185 / 7e-59 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.012G145500 [exp] 69 / 1e-13 AT5G36970 238 / 2e-78 NDR1/HIN1-like 25 (.1) Potri.006G204300 [exp] 59 / 4e-10 AT2G35980 208 / 6e-68 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.009G003800 [exp] 58 / 7e-10 AT5G22870 179 / 4e-57 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.004G067100 [exp] 56 / 5e-09 AT1G54540 203 / 3e-65 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026428 pacid=23176442 polypeptide=Lus10026428 locus=Lus10026428.g ID=Lus10026428.BGIv1.0 annot-version=v1.0 ATGTCGGAAAAAGTATTCCCAGCTTCTAAACAACCTGCAACAAACGGCACCACTCTCCCTACTACCAACGGAGGAGCTGCTTCCGCCACCGCAGTCCCCA ATCCAACCAACAAATCCAACCTCTACAACCCAACTTCACGCCTCCCTTACCGTCCCCAGCCATACAGCCGACGCCGCCGCACCCGAAGCGGGAGGAGCAT TTGCTGTTGTTGCTGCTTCTGGACCATTCTCCTCGTCCTCCTCCTCCTCCTCGTAGCCGCCATCGCAGGTGCTGCTTTCTACTCCTTGTACAAGCCTCAC CGCCCCATCTTCTCTATCCCTTCTCTCCGTATTCACCGTATGAATCTCACCACATCACCCGATGCAGCCACATCTCACATCTCCACTCTCCTCAATTTCA CCCTCATCGCTAAAAACCCCAATTCCCATCTCTCTTTCTTCTACGACCCTTTCGCCATCACCTCCTTATCCAGCGACGTTTTTCTTGGGAACGGGACTGT CCCGGGTTTCGCGCTGACCACCAAGAACGAGACCAGCCTCAGGAACGTGGTGGTTTCAGGCTCCAATGAACTTGATTCCGAGTCGGTCCATGGACTCAGA TCCGATCTCAAGAAGAAGAATGGCGTGGCGGCGCTCAAGATTCAGCTGGACACCAAAGTAGTGGTGAAGATGGGCAAATTTAAGACCAAGAAAGTTGGGA TTCGGGTGACCTGCGATGACATTAAAGGCGCAATACCGAAAGGTAAGACCCCTCCTATAGCTGTAACCACCAAGTCCAAGTGTAAGGTTGATCTGAGGAT CAAGATCTGGAAGGTCACTTTCTGA
AA sequence Show only first row Show all	>Lus10026428 pacid=23176442 polypeptide=Lus10026428 locus=Lus10026428.g ID=Lus10026428.BGIv1.0 annot-version=v1.0 MSEKVFPASKQPATNGTTLPTTNGGAASATAVPNPTNKSNLYNPTSRLPYRPQPYSRRRRTRSGRSICCCCCFWTILLVLLLLLVAAIAGAAFYSLYKPH RPIFSIPSLRIHRMNLTTSPDAATSHISTLLNFTLIAKNPNSHLSFFYDPFAITSLSSDVFLGNGTVPGFALTTKNETSLRNVVVSGSNELDSESVHGLR SDLKKKNGVAALKIQLDTKVVVKMGKFKTKKVGIRVTCDDIKGAIPKGKTPPIAVTTKSKCKVDLRIKIWKVTF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11890		EMB3135	EMBRYO DEFECTIVE 3135, unknown...		Lus10026428 [exp]	0	1
AT5G01710			methyltransferases (.1)		Lus10012217 [exp]	1.7	0.9085
AT5G11710			ENTH/VHS family protein (.1)		Lus10007460 [exp]	2.4	0.9140
AT1G12500			Nucleotide-sugar transporter f...		Lus10006684 [exp]	5.3	0.8936
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Lus10013604 [exp]	5.6	0.9153
AT2G18910			hydroxyproline-rich glycoprote...		Lus10025469 [exp]	11.4	0.8343
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10022728 [exp]	11.8	0.8572
AT3G52500			Eukaryotic aspartyl protease f...		Lus10013325 [exp]	12.4	0.8407
AT1G06475			unknown protein		Lus10020752 [exp]	15.5	0.8416
AT1G14020			O-fucosyltransferase family pr...		Lus10026624 [exp]	18.2	0.8776
AT4G16490			ARM repeat superfamily protein...		Lus10039047 [exp]	18.2	0.8553

Compare expression of checked genes

Lus10026428 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.