Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33010 1339 / 0 ATGLDP1 glycine decarboxylase P-protein 1 (.1.2) AT2G26080 1320 / 0 ATGLDP2 glycine decarboxylase P-protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024989 [exp] 1453 / 0 AT4G33010 1838 / 0.0 glycine decarboxylase P-protein 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G229300 [exp] 1326 / 0 AT4G33010 1791 / 0.0 glycine decarboxylase P-protein 1 (.1.2) Potri.018G053680 [exp] 216 / 1e-63 AT4G33010 289 / 3e-91 glycine decarboxylase P-protein 1 (.1.2) Potri.018G053640 [exp] 210 / 1e-62 AT4G33010 206 / 5e-62 glycine decarboxylase P-protein 1 (.1.2) Potri.018G053720 [exp] 200 / 9e-60 AT4G33010 175 / 7e-52 glycine decarboxylase P-protein 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF02347 [flax] [poplar] GDC-P Glycine cleavage system P-protein
Representative CDS sequence Show only first row Show all	>Lus10026429 pacid=23176414 polypeptide=Lus10026429 locus=Lus10026429.g ID=Lus10026429.BGIv1.0 annot-version=v1.0 ATGGCGGAGGTATGTGGATTCGGTAGTCTTGATGCCTTGATTGATGCTACCGTCCCTAAATCTATTAGACTGGATTCAATGAAGTTCTCCAAGTTCGATG AAGGTCTAACTGAGAGCCAAATGACTCAGCACATGCAATATTTGGCATCGAAGAACAAGGTTTTCAAGTCGTTTATAGGGATGGGATACTACAATACTCA TGTTCCTCCTGTGATTTTGAGGAACATAATGGAGAATCCTGCTTGGTACACACAGTACACCCCGTACCAAGCTGAGATATCTCAGGGAAGATTGGAGTCT CTGCTTAACTATCAGACTGTGATTACGGATCTCACCGGTATGCCTATGTCAAACGCTTCATTGCTTGATGAAGGGACTGCTGCTGCTGAGGCCATGGCTA TGTGCAATAACATTCTTAAGGGGAAGAAGAAGACCTTTATCATCGCCAATAATTGTCATCCACAAACTATTGATATCTGTAAAACTAGAGCTGCTGGTTT TGATATTAACGTGGTTACCGCAGACCTTAAGGACATTGATTACAAGTCTGGAGATGTTTGTGGTGTTCTGGTTCAGTATCCTGGCACCGAGGGTGAAGTT CTGGATTACGAGGGCTTTGTTAAGAATGCTCATGCTAATTCCGTCAAGGTGGTCATGGCAACCGACTTGCTGGCATTGACAGTATTGAAGCCTCCTGGTG AATTAGGAGCGGATATTGTTGTTGGTTCTGCGCAGAGGTTTGGTGTCCCGATGGGATATGGAGGTGCACATGCTGCTCTCTTGGCTATCCCTGGCACCGA GGGTGAAGTTCTGGATTACGAGGGCTTTGTTAAGAATGCTCATGCTAATTCCGTCAAGGTGGTCATGGCAACCGACTTGCTGGCATTGACAGTATTGAAG CCTCCTGGTGAATTAGGAGCGGATATTGTCGTTGGTTCTGCACAGAGGTTTGGGGTCCCAATGGGATATGGAGGTCCTCATGCTGCTTTCTTGGCTACTT CACAGGAGTACAAGAGGTTGATGCCTGGAAGAATTATTGGTGTAAGTGTTGATTCTTCAGGAAAGACGGCTCTACGTATGGCTATGCAAACTAGGGAGAA GCACATCCGCAGGGACAAGGCTACCAGCAACATCTGTACCGCTCAAGCCTTACTAGCAAACATGGCTGCCATGTATGCAGTCTATCATGGACCTAAAGGT CTTAAAGCGATTGGTGAGAGGGTCCATGGCCTTGCTGGGGCTCTAGCGTTGGGATTAAAGAAACTAGGGCTCGAAGTTCAGGACCTTCCTTTCTTTGACA CTGTGAAGATCAAGTGTGCCGATGCACATGCAGTTGCTGATGTAGCTTCCAAAAATGGGATGAATTTGCGAGTTGTAGATGCAACAACTGTCACCGTATC CTTTGATGAGACAACAACCTTGGAGGACGTAGACAAACTTTTTACTGTTTTTGCTGGCGGTAAAGCTGTCCCCTTCACTGCTGCATCTCTGGCTCCGGCG GTGAATGATGTGATTCCATCTGGGCTGACAAGAGAGAGCCCGTATCTGACTCATTCCATCTTTAACATGTATCATACAGAACATGAGCTTCTCAGATATA TACACAAACTGCAGTCGAAGGACCTCTCATTGTGCCACAGCATGATTCCGCTGGGATCGTGTACAATGAAACTGAATGCAACTACTGAGATGATGCCAGT CACTTGGCCTAGCTTTACTGATATTCATCCATTTGCACCTACTGAGCAGGCTGGTGGTTATCAGGAAATGTTCAACAACTTGGGTGACTTGCTGTGTACA ATCACTGGGTTCGATTCCTTCTCTTTGCAACCAAATGCTGGCGCGGCAGGAGAGTATGCTGGACTGATGGTTATTCGTGCTTATCATAAAGCGAGAGGGG ATCACCATCGCAATGTCTGCATTATACCCGTTTCAGCACATGGGACAAATCCTGCAAGTGCTGCCATGTGTGGTATGAAAATTGTTGCTGTTGGCACTGA CGCGAAAGGAAACATCAACATTGAAGAGCTGAGGCAGGCTGCCGAAGCAAATAAGGATAACCTGTCTGCACTCATGGTTACATATCCATCAACTCATGGA GTGTATGAAGAAGGTATAGACGAAATCTGTAAAATCATTCATGACAATGGCGGCCAAGTCTACATGGATGGTGCTAACATGAATGCCCAGGTGGGTCTTA CTAGCCCAGGTTTCATTGGGGCGGATGTATGCCATCTGAACCTGCACAAAACATTTTGCATTCCACATGGAGGTGGAGGTCCTGGAATGGGTCCAATTGG CGTGAAGAAGCATTTAGCACCATTTTTACCTTCACATCCGGTGGTATCTACTGGCGGTATACCGGCTCCTGAGAGCTACCAGCCGCTCGGCACCATTTCT GCTGCACCTTGGGGATCTGCCCTTATCTTGCCAATATCTTATACTTACATAGCAATGATGGGATCTCAGGGACTCACAGATGCTTCAAAGATAGCCATCT TAAATGCAAACTATATGGCAAAGCGTCTGGAGAAACACTATCCGGTTCTTTTCCGTGGTGTCAATGGAACAGTTGCCCATGAGTTTATCGTCGATTTGAG AGGTTTTAAGAATACTGCTGGAATTGAGCCTGAAGATGTTGCTAAACGTTTGATGGATTATGGATTCCATGGACCTACAATGTCATGGCCAGTCCCAGGG ACCCTTATGATTGAACCTACTGAGAGTGAGAGCAAGGCTGAGTTGGACAGGTTCTGTGATGCACTGATTTCAATTAGGGAAGAAATTGCACAGATTGAAA AAGGAAATGCTGATGTTCACAACAATGTCCTTAAGGGAGCTCCGCATCCACCATCTTTGCTGATGGGAGACACATGGACAAAACCATATTCTAGGGAATA CGCAGCTTTCCCTGCTTCATGGCTGCGTGGTGCCAAGTTTTGGCCTACCACAGGACGTGTTGACAATGTCTACGGAGATCGCAACCTCGTCTGCACGCTG CTCTCAGTATCCCAGATGGCGGACGAACAAGCAGCAGCAGCAGCTACTGCGTAG
AA sequence Show only first row Show all	>Lus10026429 pacid=23176414 polypeptide=Lus10026429 locus=Lus10026429.g ID=Lus10026429.BGIv1.0 annot-version=v1.0 MAEVCGFGSLDALIDATVPKSIRLDSMKFSKFDEGLTESQMTQHMQYLASKNKVFKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEISQGRLES LLNYQTVITDLTGMPMSNASLLDEGTAAAEAMAMCNNILKGKKKTFIIANNCHPQTIDICKTRAAGFDINVVTADLKDIDYKSGDVCGVLVQYPGTEGEV LDYEGFVKNAHANSVKVVMATDLLALTVLKPPGELGADIVVGSAQRFGVPMGYGGAHAALLAIPGTEGEVLDYEGFVKNAHANSVKVVMATDLLALTVLK PPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRLMPGRIIGVSVDSSGKTALRMAMQTREKHIRRDKATSNICTAQALLANMAAMYAVYHGPKG LKAIGERVHGLAGALALGLKKLGLEVQDLPFFDTVKIKCADAHAVADVASKNGMNLRVVDATTVTVSFDETTTLEDVDKLFTVFAGGKAVPFTAASLAPA VNDVIPSGLTRESPYLTHSIFNMYHTEHELLRYIHKLQSKDLSLCHSMIPLGSCTMKLNATTEMMPVTWPSFTDIHPFAPTEQAGGYQEMFNNLGDLLCT ITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPASAAMCGMKIVAVGTDAKGNINIEELRQAAEANKDNLSALMVTYPSTHG VYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPESYQPLGTIS AAPWGSALILPISYTYIAMMGSQGLTDASKIAILNANYMAKRLEKHYPVLFRGVNGTVAHEFIVDLRGFKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPG TLMIEPTESESKAELDRFCDALISIREEIAQIEKGNADVHNNVLKGAPHPPSLLMGDTWTKPYSREYAAFPASWLRGAKFWPTTGRVDNVYGDRNLVCTL LSVSQMADEQAAAAATA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33010		ATGLDP1	glycine decarboxylase P-protei...		Lus10026429 [exp]	0	1
AT4G33010		ATGLDP1	glycine decarboxylase P-protei...		Lus10024989 [exp]	2.0	0.8930
AT4G15530		PPDK	pyruvate orthophosphate dikina...		Lus10034005 [exp]	2.2	0.9045
AT5G20280		SPSA1, ATSPS1F	sucrose-phosphate synthase A1,...		Lus10038119 [exp]	3.9	0.8665
AT4G15530		PPDK	pyruvate orthophosphate dikina...		Lus10012770 [exp]	5.2	0.8859
AT4G35300		TMT2	tonoplast monosaccharide trans...		Lus10030726 [exp]	6.0	0.8787
AT3G10420		SPD1	SEEDLING PLASTID DEVELOPMENT 1...		Lus10028811 [exp]	10.1	0.8662
AT1G11860			Glycine cleavage T-protein fam...		Lus10001441 [exp]	10.6	0.8633
AT5G57040			Lactoylglutathione lyase / gly...		Lus10021573 [exp]	13.0	0.8421
AT2G22730			Major facilitator superfamily ...		Lus10019244 [exp]	14.7	0.8177
AT1G11860			Glycine cleavage T-protein fam...		Lus10001624 [exp]	15.5	0.8568

Compare expression of checked genes

Lus10026429 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.