Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32980 277 / 3e-88 HD ATH1 homeobox gene 1 (.1) AT2G27220 155 / 2e-42 HD BLH5 BEL1-like homeodomain 5 (.1.2) AT4G34610 150 / 7e-40 HD BLH6 BEL1-like homeodomain 6 (.1.2) AT2G16400 145 / 2e-38 HD BLH7 BEL1-like homeodomain 7 (.1) AT1G19700 140 / 3e-36 HD BEL10, BLH10 BEL1-like homeodomain 10 (.1.2.3) AT1G75410 139 / 4e-36 HD BLH3 BEL1-like homeodomain 3 (.1.2) AT2G35940 140 / 9e-36 HD BLH1, EDA29 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) AT4G36870 139 / 4e-35 HD BLH2, SAW1 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) AT2G23760 135 / 4e-34 HD BLH4, SAW2 SAWTOOTH 2, BEL1-like homeodomain 4 (.1.2.3) AT1G75430 127 / 2e-33 HD BLH11 BEL1-like homeodomain 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013579 [exp] 160 / 4e-43 AT2G35940 427 / 1e-142 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10004201 [exp] 159 / 3e-42 AT2G35940 504 / 1e-170 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10029405 [exp] 158 / 6e-42 AT2G35940 478 / 9e-161 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10016790 [exp] 139 / 2e-36 AT4G36870 371 / 2e-121 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) Lus10022485 [exp] 140 / 1e-35 AT4G36870 398 / 5e-128 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) Lus10010633 [exp] 139 / 1e-35 AT1G75410 340 / 3e-110 BEL1-like homeodomain 3 (.1.2) Lus10017481 [exp] 138 / 6e-35 AT4G34610 424 / 1e-141 BEL1-like homeodomain 6 (.1.2) Lus10000184 [exp] 138 / 7e-35 AT4G34610 447 / 7e-151 BEL1-like homeodomain 6 (.1.2) Lus10028802 [exp] 137 / 1e-34 AT4G34610 447 / 1e-150 BEL1-like homeodomain 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G054700 [exp] 314 / 4e-101 AT4G32980 327 / 1e-105 homeobox gene 1 (.1) Potri.006G230700 [exp] 308 / 8e-99 AT4G32980 314 / 1e-100 homeobox gene 1 (.1) Potri.009G017400 [exp] 164 / 8e-44 AT2G35940 310 / 4e-95 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.006G203000 [exp] 162 / 2e-43 AT2G35940 491 / 9e-166 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.016G069700 [exp] 161 / 5e-43 AT2G35940 501 / 1e-169 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.001G216600 [exp] 161 / 7e-43 AT2G35940 377 / 7e-121 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.004G159300 [exp] 148 / 2e-38 AT4G34610 416 / 2e-138 BEL1-like homeodomain 6 (.1.2) Potri.009G120800 [exp] 145 / 9e-38 AT4G34610 418 / 2e-139 BEL1-like homeodomain 6 (.1.2) Potri.001G100800 [exp] 143 / 8e-37 AT5G41410 440 / 4e-147 BELL 1, POX (plant homeobox) family protein (.1) Potri.003G131300 [exp] 142 / 1e-36 AT5G41410 434 / 2e-144 BELL 1, POX (plant homeobox) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07526 [flax] [poplar] POX Associated with HOX CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10026432 pacid=23176448 polypeptide=Lus10026432 locus=Lus10026432.g ID=Lus10026432.BGIv1.0 annot-version=v1.0 ATGGAGAATGACTTGTATACTAATGTTGGAATGGATATGGAAAGTAGGAATTGGTTCAGAGCATCATCAGCTGATAGAATGACATCCCAAGAAGGAACAA CTTCAAGCCCTCTTCTTCTTCATTCAATCGACTTCAACAACCGCCAACAGCAGAACCAGCGGAGTGTCTATTATAGGTCAATGCTAGTAGAGCCCAGCAA CAACAATAATATGTTTCATCATCTTCACCAAGATGCACATGCACTCTCATATTCTGGACCTTCCTTACTTCACCCTCTAGAAATGGCTGCAAACTACCAA GTTCCAAACGACTCTGGCGTCCTCCCATTTGCACTGGAAGGTGGATATGGTGGATTTGAGAGTAGCTGCTCGCCTGAGCTCGTTTCCTGCTACAATATTG ATTGTGGTGTTGAGTTGAGCACAGAGAACCCTCCACCCTGCTCCAGAATCAGCAATAAGCTCTGTTTAAGCCTGGCCACATCTCAGAACTCGGAGCAAAT TTGCTCTAATAGGAATGAGCTTTCCCTTTATAGAGGCGGTCGGTTCTCTCAAGTTGTATCAGGGTCCAAATATCTCAACGTTGTTCAGGAAATACTAGGC CAAATTGCGAGCTGTTCGCTGGAGAATCTTGATACACCCAGTTACTCTATTACCAGCGGTGCCAGTGCTCAGACAAGCTGGCACCACCCAGCAGCTGAAC AGGGAGTACAAGCCTTTGAAATTCAACCGCCAGATCCTGCTTTGCAAAAGCAAGCATTGCAAGCCAAGAAAGTTCAACTGCTAAGTCTGCTACAAATGGT GGACAACCGGTACAACCAATGTGTGGATGAGATACACACGATAGTATCAGCATTCCATGCCGCCACGGAATTGGACCCTCAAATACATACCCGCTTTGCT CTCCAGACCATTTCTTTCATGTACAAAGACCTGAAGGGGAGGATCAGCAACCAGATCCTTGTAATGGGTCCGGATTATTCTTGCAATGACCTGGAAAAAC AATGGAGTCTTGGGCAGCAGCTGAAGAAGAAAGAGCATCAGTTCTGGAGGCCCCAGAGAGGACTTCCTGAAAGATCTGTTGCCGTGTTGCGGGCATGGAT GTTTCACAACTTCCTTCATCCGTACCCAAAAGATGCAGAAAAGCATTTGTTGGCGGTTAAAAGTGGACTCACTAGGAGTCAGGTTTCGAATTGGTTCATA AACGCCCGGGTAAGGGTGTGGAAACCGATGATAGAGGAAATGTATGCAGAGATGAACAGAAGAAAAGGGCCAAGTGGGACGACGACCACAAACAGTAGCA GCAATCTCACTACAAGTCAAATTAGCATTCGCAATCCTATCCTTGTTCCTGCTCCTCCTGCACTTTAA
AA sequence Show only first row Show all	>Lus10026432 pacid=23176448 polypeptide=Lus10026432 locus=Lus10026432.g ID=Lus10026432.BGIv1.0 annot-version=v1.0 MENDLYTNVGMDMESRNWFRASSADRMTSQEGTTSSPLLLHSIDFNNRQQQNQRSVYYRSMLVEPSNNNNMFHHLHQDAHALSYSGPSLLHPLEMAANYQ VPNDSGVLPFALEGGYGGFESSCSPELVSCYNIDCGVELSTENPPPCSRISNKLCLSLATSQNSEQICSNRNELSLYRGGRFSQVVSGSKYLNVVQEILG QIASCSLENLDTPSYSITSGASAQTSWHHPAAEQGVQAFEIQPPDPALQKQALQAKKVQLLSLLQMVDNRYNQCVDEIHTIVSAFHAATELDPQIHTRFA LQTISFMYKDLKGRISNQILVMGPDYSCNDLEKQWSLGQQLKKKEHQFWRPQRGLPERSVAVLRAWMFHNFLHPYPKDAEKHLLAVKSGLTRSQVSNWFI NARVRVWKPMIEEMYAEMNRRKGPSGTTTTNSSSNLTTSQISIRNPILVPAPPAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32980	HD	ATH1	homeobox gene 1 (.1)		Lus10026432 [exp]	0	1
AT5G67460			O-Glycosyl hydrolases family 1...		Lus10002466 [exp]	5.1	0.9701
AT1G64080		MAKR2	MEMBRANE-ASSOCIATED KINASE REG...		Lus10028754 [exp]	5.8	0.9677
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Lus10001729 [exp]	9.8	0.9478
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Lus10026036 [exp]	9.9	0.9361
AT3G60670			PLATZ transcription factor fam...		Lus10015881 [exp]	10.0	0.9612
AT2G02540	ZF_HD	ATHB21, ZFHD4, ...	ZINC FINGER HOMEODOMAIN 3, ZIN...		Lus10010693 [exp]	11.7	0.9667
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10011731 [exp]	13.0	0.9385
AT1G64080		MAKR2	MEMBRANE-ASSOCIATED KINASE REG...		Lus10017532 [exp]	13.8	0.9456
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10014528 [exp]	14.1	0.9613
AT2G18350	ZF_HD	ATHB24, ZHD6	ZINC FINGER HOMEODOMAIN 6, hom...		Lus10007147 [exp]	14.7	0.9587

Compare expression of checked genes

Lus10026432 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.