Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56750 435 / 6e-154 NDL1 N-MYC downregulated-like 1 (.1) AT5G11790 425 / 5e-150 NDL2 N-MYC downregulated-like 2 (.1) AT2G19620 419 / 1e-147 NDL3 N-MYC downregulated-like 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020241 [exp] 383 / 2e-133 AT5G56750 431 / 1e-151 N-MYC downregulated-like 1 (.1) Lus10001786 [exp] 382 / 7e-133 AT5G56750 465 / 4e-165 N-MYC downregulated-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G230800 [exp] 474 / 2e-169 AT5G56750 524 / 0.0 N-MYC downregulated-like 1 (.1) Potri.018G054900 [exp] 471 / 4e-168 AT5G11790 516 / 0.0 N-MYC downregulated-like 2 (.1) Potri.018G067700 [exp] 457 / 1e-162 AT5G56750 552 / 0.0 N-MYC downregulated-like 1 (.1) Potri.013G038100 [exp] 378 / 2e-131 AT5G56750 462 / 6e-164 N-MYC downregulated-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF03096 [flax] [poplar] Ndr Ndr family
Representative CDS sequence Show only first row Show all	>Lus10026433 pacid=23176412 polypeptide=Lus10026433 locus=Lus10026433.g ID=Lus10026433.BGIv1.0 annot-version=v1.0 ATGTATCATCTCATTTTGGGGAGTGTACTTTATCTGACGTATTGCACTTCACTGCAGGAGTACCTCATCAACACATTTTGTGGTTCCCTGTGCGTTTCAG TATATGGCGACCAGGATAAGCCTGCACTTGTTACATATCCTGATTTGGCTCTAAGTCATATGTCTTGCTTCCAGGAGCTACTTTTTTGTCCTGAAGCATG TTCTTTGCTCCTCCACAATTTTTGTATATATCACATCAATCCTCCTGGCCATGAGTTGGGTGCTGCCACAATATGTGCTGGTGATCCTATACTTTCTGTT GATGATTTAGCAGACCAAGTCGTGGAGGTGCTTAACTACTTTGGGCTTGGAGCAGTGATGTGTATAGGGGTTACAGCTGGAGCTTACATTCTTACTATGT TTGCGATGAAATACAAGCAACGTGTTCTTGGCTTAATTCTCATTTCTCCTTTGTGCAAAGCCCCTTCTTGGACAGAATGGTTGTACAACAAGGTTCTCTC CAACTTGCTTTACTATTATGGTATGTGTGGAGTGGTGAAGGAGTTGTTGCTCAAAAGATACTTTAGTAAGGATGCTCGAGGAAATGCTCAAGTACCGGAA TCTGATATTGTTCAGGCTTGTAGAAGAGTTAGTCCTCAAGTTTATGCACTTGTGTTACCATCTTCCAGTCTCACAGGGGAGTACTCTCCCTTTCATGCAG AGGCTCTGTACATGACATCAAAGCTTGAAAGACGGAAAAGCGCGTTAGTTGAGGTTCAGGCATGTGGGTCAATGGTAACAGAGGAGCAACCACATGCAAT GTTAGTACCAATGGAGTATTTCTTGATGGGTTACGGTTTGTACAGACCAGCTAAGTTAAGCGTAAGCCCAAGAAGTCCGTTGAGTCCGCTTTGCATCTCG CCGGAACTTCTATCGCCAGAAAGTATGGGGTTGAAGTTGAAGCCAATTAAAACACGATTACGTATGTAA
AA sequence Show only first row Show all	>Lus10026433 pacid=23176412 polypeptide=Lus10026433 locus=Lus10026433.g ID=Lus10026433.BGIv1.0 annot-version=v1.0 MYHLILGSVLYLTYCTSLQEYLINTFCGSLCVSVYGDQDKPALVTYPDLALSHMSCFQELLFCPEACSLLLHNFCIYHINPPGHELGAATICAGDPILSV DDLADQVVEVLNYFGLGAVMCIGVTAGAYILTMFAMKYKQRVLGLILISPLCKAPSWTEWLYNKVLSNLLYYYGMCGVVKELLLKRYFSKDARGNAQVPE SDIVQACRRVSPQVYALVLPSSSLTGEYSPFHAEALYMTSKLERRKSALVEVQACGSMVTEEQPHAMLVPMEYFLMGYGLYRPAKLSVSPRSPLSPLCIS PELLSPESMGLKLKPIKTRLRM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56750		NDL1	N-MYC downregulated-like 1 (.1...		Lus10026433 [exp]	0	1
AT3G52740			unknown protein		Lus10022717 [exp]	2.0	0.8653
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Lus10003195 [exp]	4.9	0.8332
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10012586 [exp]	6.5	0.8431
AT1G20925			Auxin efflux carrier family pr...		Lus10030715 [exp]	7.7	0.8270
AT5G28237			Pyridoxal-5'-phosphate-depende...		Lus10007651 [exp]	8.4	0.8175
AT2G26910		PEC1, ABCG32, P...	PERMEABLE CUTICLE 1, ATP-bindi...		Lus10019453 [exp]	8.7	0.8418
					Lus10011795 [exp]	9.2	0.7902
AT1G49430		LRD2, LACS2	LATERAL ROOT DEVELOPMENT 2, lo...		Lus10021021 [exp]	11.4	0.8057
AT2G03090		ATHEXPALPHA1.3,...	EXPANSIN 15, expansin A15 (.1)		Lus10020257 [exp]	13.9	0.7663
AT4G25960		ABCB2, PGP2	ATP-binding cassette B2, P-gly...		Lus10000910 [exp]	14.4	0.8153

Compare expression of checked genes

Lus10026433 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.