Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11980 840 / 0 conserved oligomeric Golgi complex component-related / COG complex component-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024994 [exp] 985 / 0 AT5G11980 881 / 0.0 conserved oligomeric Golgi complex component-related / COG complex component-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G225500 [exp] 869 / 0 AT5G11980 890 / 0.0 conserved oligomeric Golgi complex component-related / COG complex component-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF04124 [flax] [poplar] Dor1 Dor1-like family
Representative CDS sequence Show only first row Show all	>Lus10026437 pacid=23176422 polypeptide=Lus10026437 locus=Lus10026437.g ID=Lus10026437.BGIv1.0 annot-version=v1.0 ATGGGAGCTGAAAATGGAAGCGAATCGTCGGGTTTGGCGACCCTTCTTCCTCTGGCCGCCGCCTCTCAGCAGCCTTACGTATCTGAGCTTCTGTCCTTCA CTCTCGATCGACTTCACAAAGAACCAGAGCTACTAAGGGTTGATGCCGAGCGAATAGAGAGGCAAATGCAGGAGGTAGCGGTGGGGAATTACCGCGCCTT CATTGCTGCTGCTGATGCTTTAAATGCGATTAGAGAAGAAGTGTCTTACATTGATAAGCATCTTGAATCACTGATATCTGAGATCCCTAAGCTAACATCT GGTTGCACTGAGTTCATTCAATCAGCAGAAGCGATTCTGGAGAAGCGGAAGATGAATCAAACATTGCTCACGAACCATAGTACATTGCTCGATTTGCTTG AAATTCCCCAGCTCATGGACACGTGTGTGAGAAATGGTAATTATGATGAAGCTCTTGACTTAGAAGCATATGTTGGAAAACTTTCAACCATGCATCCCAA ATTACCTGTCATCCAGGCTCTGGCTGATGAAGTTAAACAGACCACTCAGTCTCTTTTGGCTCAGCTTCTCCAGAAACTTCGGTCTAATATTCAGTTACCA GAGTGCCTCCGCATTATTGGCTATCTGCGGCGAATAGGAGTATTTAGTGAGTATGAAATGCGTTTACAGTTTTTGAGATGTCGAGAGGCATGGCTCACAG GCATTCTTGAAGATCTGGATCAGCGAAATGCTTATGAGTTCTTGAAAGGAATGATAAACTGCCACAGAATGCATCTCTTTGATGTTGTGAATCAATATAG GGCAATATTTGCTGATGATACGTCAGGTAGTGAAGAGAACTATGACGGTGGCCTTCTTTTCAGTTGGGCCATGCATCAGATAACTTCACACCTTAAAACT CTGAAAATCATGCTCCCAAAGATAACTGAGGGTGGACCACTTTCAAATATCCTGGAGCAATGCATGTACTGTGCAATGGGGCTCGGAGGAGTTGGGCTAG ATTTTCGAGGCTTGCTTTCTCCTCTATTTGAAGAGGCAGTTGTCAATTTATTCTCTAAGAACATGGATTCAGCAGTTGAAAATTTTCAGTTGGTTTTAGA TTCACATCGCTGGGTGCCACTACCAGCTGTTGGCTATCCAATTACTAATATTGGTGAAGAGACCCAGGATGATATAACACCACCGTCTTATTTAATGGAG CATCCACCTCTAGCAGTATTTGTTAATGGTGTATCCGCTGCAATGAATGAGCTGCGCCCCTGTGCTCCCTTGAGCCTAAAACATGTGCTTGCTCTAGAAT TGATTAAGGGATTGCAAGCTGTTGCAGACTCTCTGTTAAGGTATAATGCGACTAGGATGCTGAGAGAAAATGAGTCGGGGCTTTTCCTCTCACTTTGCAG AGCATTCATAGAGGTGGCTTATCCACATTGCGCGACATGTTTTGGGCGGTGTTATCCAGGAGGTGCTGGTTTTATTATGAATGCAAACAACTTATTGGAT GGCATGAATCGGCTATTAGTGACTGCCCCATCCAGGGAGCTCCGAAAGACAGTCGACATCAACAACAGTAACACGGAAGAGAAGGGTGTAGCTGAAAATG GTATCGTTGAGAATGGGGCAACTTCAAATGGTGAAGCGGACAAGACAAACAATACGGGCGGATGA
AA sequence Show only first row Show all	>Lus10026437 pacid=23176422 polypeptide=Lus10026437 locus=Lus10026437.g ID=Lus10026437.BGIv1.0 annot-version=v1.0 MGAENGSESSGLATLLPLAAASQQPYVSELLSFTLDRLHKEPELLRVDAERIERQMQEVAVGNYRAFIAAADALNAIREEVSYIDKHLESLISEIPKLTS GCTEFIQSAEAILEKRKMNQTLLTNHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAYVGKLSTMHPKLPVIQALADEVKQTTQSLLAQLLQKLRSNIQLP ECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILEDLDQRNAYEFLKGMINCHRMHLFDVVNQYRAIFADDTSGSEENYDGGLLFSWAMHQITSHLKT LKIMLPKITEGGPLSNILEQCMYCAMGLGGVGLDFRGLLSPLFEEAVVNLFSKNMDSAVENFQLVLDSHRWVPLPAVGYPITNIGEETQDDITPPSYLME HPPLAVFVNGVSAAMNELRPCAPLSLKHVLALELIKGLQAVADSLLRYNATRMLRENESGLFLSLCRAFIEVAYPHCATCFGRCYPGGAGFIMNANNLLD GMNRLLVTAPSRELRKTVDINNSNTEEKGVAENGIVENGATSNGEADKTNNTGG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11980			conserved oligomeric Golgi com...		Lus10026437 [exp]	0	1
AT2G26680			unknown protein		Lus10043275 [exp]	1.4	0.9218
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Lus10029902 [exp]	1.7	0.9373
AT4G00740		QUA3	QUASIMODO 3, S-adenosyl-L-meth...		Lus10018848 [exp]	2.4	0.9152
AT3G27320			alpha/beta-Hydrolases superfam...		Lus10022326 [exp]	2.8	0.9127
AT1G64980			Nucleotide-diphospho-sugar tra...		Lus10024531 [exp]	3.2	0.9107
AT3G25040		ERD2B	endoplasmic reticulum retentio...		Lus10011846 [exp]	4.7	0.8952
AT3G11950		ATHST	TRAF-like superfamily protein ...		Lus10029325 [exp]	5.3	0.9024
AT4G36660			Protein of unknown function (D...		Lus10026030 [exp]	5.5	0.9059
AT2G26680			unknown protein		Lus10019418 [exp]	7.5	0.8864
AT1G64650			Major facilitator superfamily ...		Lus10033228 [exp]	8.3	0.8827

Compare expression of checked genes

Lus10026437 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.