Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12000 510 / 5e-174 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G26150 506 / 1e-172 protein kinase family protein (.1) AT2G24370 493 / 3e-166 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT4G31230 465 / 9e-156 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G78940 454 / 1e-152 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) AT1G16760 452 / 7e-151 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G17540 448 / 1e-149 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G72760 437 / 9e-146 Protein kinase superfamily protein (.1) AT2G07020 435 / 6e-145 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT3G20200 431 / 2e-142 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020185 [exp] 495 / 4e-170 AT2G24370 741 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10027593 [exp] 491 / 5e-169 AT2G24370 665 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10021596 [exp] 499 / 9e-169 AT2G24370 828 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10040573 [exp] 499 / 1e-168 AT2G24370 815 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10008542 [exp] 496 / 1e-167 AT2G24370 823 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10026989 [exp] 490 / 5e-165 AT2G24370 1014 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10035712 [exp] 458 / 4e-156 AT1G16760 624 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10024212 [exp] 461 / 6e-154 AT2G24370 780 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10037298 [exp] 457 / 4e-152 AT1G16760 820 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G225300 [exp] 544 / 0 AT5G12000 749 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.018G061600 [exp] 543 / 0 AT5G12000 714 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G078500 [exp] 494 / 2e-167 AT2G24370 824 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.018G002400 [exp] 486 / 6e-164 AT2G24370 956 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.001G198300 [exp] 474 / 3e-158 AT5G12000 639 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.007G001900 [exp] 452 / 2e-150 AT1G78940 757 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.014G001700 [exp] 441 / 8e-146 AT1G78940 783 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.004G170742 [exp] 412 / 1e-134 AT1G78940 786 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.006G147000 [exp] 348 / 8e-111 AT5G57035 674 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.004G233000 [exp] 340 / 6e-107 AT4G25160 874 / 0.0 U-box domain-containing protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0039 [flax] [poplar] HUP PF00582 [flax] [poplar] Usp Universal stress protein family
Representative CDS sequence Show only first row Show all	>Lus10026439 pacid=23176415 polypeptide=Lus10026439 locus=Lus10026439.g ID=Lus10026439.BGIv1.0 annot-version=v1.0 ATGGCTCATGTAGCATTAGAAGATGAAGCTTTTGCATTGGTAAATGCAACTGCTGTTGCCATCGACAAGGATAAGAACAGCCAACATGTTGTTCGTTGGG CCATTGATCGTCTCCTCGTCAACAATCCTATTATTGTTTTGCTCCATGTTAGGCACAAGAACAATCATTATCAAATTTTGGAGAACGATGAAATTGACCA TATTTTTACCCCGTATCGTGGATATTGTGCACGCAAAGGGGTACTGTTGAAGGAGGTTATTCTAGAAGAAACTATAGATGTGGCCCGAACAATTCTTGAT TATGTCAATGCACACTTAATAGGAAGTATAGTTGTTGGAGCATGTGCAACCACAAAATATGCTATTGCATGGAAATGGAAAACTCAAGATGTAGCCATGA CGGTCATGAAGAATGCACCTGACTTTTGTTCTGTTTATATAATATCTAAAGGAAAAGTCCTATCCGTAAAGACTGCTGTACGATCAGTTTCAAACTCTCC TTTTCCACCAAAAGCACCAATTTCTAATGGTTCGCAAGATGGTTTTGACGTAGATAATACATATAGAGGTTACCCTGGAAAAAGATTATCCAAAAATGGA GGAATTGATCGGCTCCCATACGATTTTCAAATAGCTCAGATGATTCTGACGTTAAAGTTGGAAGAAGCTCGACGGGCAGAGCAAGCAAGAATTGCCGAAG AATCGACTCTTGCTATAATAGAGATCGAGAAGGCCAAGTGCAAAGCAGCGATGGAAGCAGCCGAGAAAGCTCAAAAACTAGCAGAAATGGAGGCACAAAA AAGAAAGTTTGCAGAGATGAAAGCAAAAAAAGAGGCAGATGCCAAGAATCGTGCATTAAATGCTTTAACAAAAAATGATGTACGATACAGGAAATATACC ATTGAAGATATTGAAGCAGCTACTGAAAAGTTCAAACAATCATTCAAGATAGGTGAAGGGGGTTATGGACCTGTGTACAAAGGTAGACTTGATCACACCC CTGTTGCCATTAAGGTTTTGAGACCTGATGCAGCTCAAGGAAAGAAGCAATTTCAACAAGAGGTTGAAGTTCTTAGCTGCATTCGACATCCACATTTGGT CCTCTTACTGGGTGCATGTCCTGAATATGGATGCTTAGTGTATGAATACTTGGAAAATGGAAGTTTAGAAGATAGGTTGCTTAGAAAAGACAACACCCCA CCTATACCTTGGAGAAAGCGATTTGATATAGCTGCTGAGATTGCCACTGGACTTCTTTTCCTACACCAAGCAAAGCCAGAGCCACTAGTTCATAGGGATC TTAAACCAGCTAACATCCTCTTGGATCGCAACTACGTTAGCAAGATTAGTGACGTAGGACTAGCACGACTAGTCCCTCCATCAGTTGCTGATAGTGTTAC TCAATACTATATGACTTCAGCTGCTGGAACCTTTTGCTATATAGACCCTGAGTATCAACAAACAGGGATGTTAACTACTAGATCAGATGTCTACTCCTTT GGTATAATGCTACTTCAAATTATCACTGCAAAGCCCCCAATGGGTTTGGCTCACCATGTGGCAAGGGCAATTGAGAAGGGAAAGTTTACGGATATGCTTG ACCAATCCATTGTCGATTGGCCTCTAGATCATGCTTTGGAATTTGCTAAATTAGCATTGAAGTGTTGTGAACTAAGGAAGAAAGATCGTCCAAGTCTTGC CTCTATCGTGGTACCAGAGCTCAATAGGCTACGAGGTTTTGGAAGTGGTGAGGGAATAATTGATGACCTATGA
AA sequence Show only first row Show all	>Lus10026439 pacid=23176415 polypeptide=Lus10026439 locus=Lus10026439.g ID=Lus10026439.BGIv1.0 annot-version=v1.0 MAHVALEDEAFALVNATAVAIDKDKNSQHVVRWAIDRLLVNNPIIVLLHVRHKNNHYQILENDEIDHIFTPYRGYCARKGVLLKEVILEETIDVARTILD YVNAHLIGSIVVGACATTKYAIAWKWKTQDVAMTVMKNAPDFCSVYIISKGKVLSVKTAVRSVSNSPFPPKAPISNGSQDGFDVDNTYRGYPGKRLSKNG GIDRLPYDFQIAQMILTLKLEEARRAEQARIAEESTLAIIEIEKAKCKAAMEAAEKAQKLAEMEAQKRKFAEMKAKKEADAKNRALNALTKNDVRYRKYT IEDIEAATEKFKQSFKIGEGGYGPVYKGRLDHTPVAIKVLRPDAAQGKKQFQQEVEVLSCIRHPHLVLLLGACPEYGCLVYEYLENGSLEDRLLRKDNTP PIPWRKRFDIAAEIATGLLFLHQAKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPPSVADSVTQYYMTSAAGTFCYIDPEYQQTGMLTTRSDVYSF GIMLLQIITAKPPMGLAHHVARAIEKGKFTDMLDQSIVDWPLDHALEFAKLALKCCELRKKDRPSLASIVVPELNRLRGFGSGEGIIDDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12000			Protein kinase protein with ad...		Lus10026439 [exp]	0	1

Compare expression of checked genes

Lus10026439 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.