Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33060 446 / 3e-153 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G44600 122 / 2e-29 AtCYP71, CYP71 cyclophilin 71, cyclophilin71 (.1) AT2G36130 112 / 3e-29 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT1G01940 107 / 3e-27 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G67530 112 / 2e-26 ATPUB49 plant U-box 49 (.1) AT4G34960 87 / 2e-19 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G62030 84 / 7e-18 CYP20-3, ROC4 cyclophilin 20-3, rotamase CYP 4 (.1.2.3) AT5G13120 79 / 2e-16 Pnsl5, ATCYP20-2 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) AT4G34870 77 / 3e-16 ATCYP1, ROC5 ARABIDOPSIS THALIANA CYCLOPHILIN 1, rotamase cyclophilin 5 (.1) AT2G38730 77 / 4e-16 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024999 [exp] 389 / 1e-129 AT4G33060 344 / 9e-112 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10020573 [exp] 125 / 1e-30 AT3G44600 1115 / 0.0 cyclophilin 71, cyclophilin71 (.1) Lus10006271 [exp] 125 / 1e-30 AT3G44600 1110 / 0.0 cyclophilin 71, cyclophilin71 (.1) Lus10007794 [exp] 116 / 2e-27 AT5G67530 868 / 0.0 plant U-box 49 (.1) Lus10004731 [exp] 114 / 9e-27 AT5G67530 916 / 0.0 plant U-box 49 (.1) Lus10009237 [exp] 103 / 1e-25 AT1G01940 317 / 2e-112 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10021335 [exp] 100 / 6e-25 AT2G36130 286 / 1e-100 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10017010 [exp] 100 / 2e-24 AT2G36130 278 / 4e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10024831 [exp] 84 / 7e-17 AT3G63400 308 / 8e-99 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G061700 [exp] 487 / 1e-169 AT4G33060 548 / 0.0 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.006G225201 [exp] 129 / 3e-36 AT4G33060 125 / 1e-35 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.009G146400 [exp] 125 / 7e-31 AT3G44600 1095 / 0.0 cyclophilin 71, cyclophilin71 (.1) Potri.016G075600 [exp] 113 / 1e-29 AT2G36130 278 / 3e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.002G149700 [exp] 105 / 3e-26 AT1G01940 293 / 3e-103 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.005G148900 [exp] 108 / 4e-25 AT5G67530 806 / 0.0 plant U-box 49 (.1) Potri.014G071600 [exp] 101 / 4e-25 AT1G01940 293 / 2e-103 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.009G132800 [exp] 82 / 1e-17 AT4G34960 328 / 2e-115 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.003G167700 [exp] 82 / 2e-17 AT5G13120 277 / 5e-94 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Potri.001G030000 [exp] 81 / 2e-17 AT2G38730 348 / 5e-124 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0475 [flax] [poplar] Cyclophil-like PF00160 [flax] [poplar] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Lus10026441 pacid=23176420 polypeptide=Lus10026441 locus=Lus10026441.g ID=Lus10026441.BGIv1.0 annot-version=v1.0 ATGTCGTCCATCTACGTGCTGGAGCCGCCTACGAAAGGCAAGGTAATCCTAAACACTACCCACGGCCCAATTGATATCGAGCTCTGGCCGAAGGAGGCTC CCAAGGCTGTTCGCAACTTCGTCCAGCTCTGCCTCGAAGGCTACTATGGCAACACTATTTTTCACCGTATTATCAAAGGCTTCATCATTCAGGGCGGTGA TCCTACTGGAACTGGGACGGGTGGTGATAGTATATATGGGGGTTCCTTTTCTGACGAATTTCATTCTCGTCTGAGATTCAACCACAGAGGGTTAGTTGCT TGTGCTAACGCTGGTTCACCACATTCAAATGGGAGCCAGTTCTTTATGACGTTGGATAAGTCTGATTGGCTTGACCGAAAGAATACAATCTTTGGGAAGG TTTTGTGGAATCCTTTTGATGATATAGTTCCAAGGGTAGTGCCTACAACTGTTGATCAATCTTCAACTGATGCTGAAAGTGATAAGGATTTGAAAAGGAA ACTTGTCAAGAAATTGAACTTGCTTTCATTTGGAGAAGAGGCTGAAGAGGAGGAGAAGGAACTTGCAGCTGTGAAACTAAAGATCAAGAGTAGTCATGAT GTGTTGAATGATCCCCGACTCCTAAAGGAGAATCAACAAATAGAGGAACCATTGAAGTTGTATGCCTTCCTCAACAGTTTCCTCATCATACCACTACAGA ATTTGTCGGACGCCAAAGCTATGAGGGAACAACAGTTATCTGTGAGAGAAACTCTGAAATCAAAGAAAGAACGGTGGCCGAGAACTTCAGGAGCTGAAGT TTCTAATAGTGATGAGGATGACGATAATGAGGTCAACTTCGATGCACGAATGCGTCGCCAATTGCTAAGAAAACGGGAAGAATTTGGAGAGTTACCATCT AAACAAAAGAAAATTGGAAGTTCCAGTGCAGAAAATGGTGAAATTTCTGCTTCAAGGTTAAATGCTGAAAGTTCTGATGATGAGAAACCAAAGCTAGAGA AGCTGTCACTAAAAAAGAAAGGAGCAGGATCAGAAGTAAGAGCGCAACGCATGGCTACTGCAGATACAGAGTTGCAGTTGTATGGTGAAGCTGAGCGAGG AAGACTCTTGCAAAAGCAAAAGAAACGAAGAATCGGAAGACGCGAGGACGAAGTTTTAGCTAAACTTGAGAGGTTCACAAAGACGATTTCTGGGAAAGCT ATTGCATCGAACAGTGAGGCTGAAGATGGTCACAAGGAGGATTTGTCAGACTGGAGCTCTGTACAACTAAAATTTGCCCCTGAACGTGGAAAGGATAAGA TGTCACGTAAAGATGACCCAGATGACTATGTTGTGCATGATCCTCTATTGGAGAAGGGAAAAGAGAAATTCAATAGAATGCAAGCAAAGCAGAAGAGACG AGAAAGGGAATGGGCTGGACGGTCTCTAACATAG
AA sequence Show only first row Show all	>Lus10026441 pacid=23176420 polypeptide=Lus10026441 locus=Lus10026441.g ID=Lus10026441.BGIv1.0 annot-version=v1.0 MSSIYVLEPPTKGKVILNTTHGPIDIELWPKEAPKAVRNFVQLCLEGYYGNTIFHRIIKGFIIQGGDPTGTGTGGDSIYGGSFSDEFHSRLRFNHRGLVA CANAGSPHSNGSQFFMTLDKSDWLDRKNTIFGKVLWNPFDDIVPRVVPTTVDQSSTDAESDKDLKRKLVKKLNLLSFGEEAEEEEKELAAVKLKIKSSHD VLNDPRLLKENQQIEEPLKLYAFLNSFLIIPLQNLSDAKAMREQQLSVRETLKSKKERWPRTSGAEVSNSDEDDDNEVNFDARMRRQLLRKREEFGELPS KQKKIGSSSAENGEISASRLNAESSDDEKPKLEKLSLKKKGAGSEVRAQRMATADTELQLYGEAERGRLLQKQKKRRIGRREDEVLAKLERFTKTISGKA IASNSEAEDGHKEDLSDWSSVQLKFAPERGKDKMSRKDDPDDYVVHDPLLEKGKEKFNRMQAKQKRREREWAGRSLT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33060			Cyclophilin-like peptidyl-prol...		Lus10026441 [exp]	0	1
AT5G67380		ATCKA1, CKA1	casein kinase alpha 1 (.1.2)		Lus10032849 [exp]	3.9	0.9073
AT1G72050	C2H2ZnF	TFIIIA	transcription factor IIIA (.1....		Lus10015657 [exp]	7.3	0.8835
AT1G18260		HRD3A, EBS5	EMS-mutagenized bri1 suppresso...		Lus10009047 [exp]	7.5	0.9087
AT1G30140			unknown protein		Lus10024751 [exp]	7.7	0.9138
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10010374 [exp]	9.8	0.8924
AT5G37290			ARM repeat superfamily protein...		Lus10008435 [exp]	10.1	0.9047
AT1G15200			protein-protein interaction re...		Lus10003959 [exp]	10.2	0.9026
AT5G49570		ATPNG1	peptide-N-glycanase 1 (.1)		Lus10015918 [exp]	10.4	0.8773
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Lus10014928 [exp]	12.6	0.9054
AT1G19100			Histidine kinase-, DNA gyrase ...		Lus10039959 [exp]	13.7	0.8994

Compare expression of checked genes

Lus10026441 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.