Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010518 [exp] 119 / 7e-34 ND / Lus10031757 [exp] 101 / 1e-26 ND 39 / 0.002 Lus10008146 [exp] 82 / 4e-19 ND / Lus10001304 [exp] 77 / 3e-16 AT5G08020 40 / 0.006 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10001095 [exp] 71 / 3e-15 ND 38 / 0.002 Lus10040056 [exp] 69 / 1e-14 AT5G28823 41 / 2e-04 unknown protein Lus10037707 [exp] 68 / 3e-13 AT3G16780 343 / 8e-118 Ribosomal protein L19e family protein (.1) Lus10035493 [exp] 68 / 3e-13 AT4G11450 462 / 2e-151 Protein of unknown function (DUF3527) (.1) Lus10036397 [exp] 63 / 8e-13 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026443 pacid=23176423 polypeptide=Lus10026443 locus=Lus10026443.g ID=Lus10026443.BGIv1.0 annot-version=v1.0 ATGGTGCCTAAGGAAATCATTGATAAGGGACTGCAGAAGATGCGCTCCGCCTTGGTAGCTCAATTTATTGGCTCTGCCCCTCCAATGTGCAACATTGCGT CCATGCTTAATCGACTTTTGGAGTACGAGGGTGAAGTTTTAGTTGACCTTTCGTCGGTCAAACTCTGTGACTGGATTTTGCGACGTGCCTGGCATATCCA TCATTCTGATATTGCGCCCCTGGATCTGGAGAAGAAGGCAGTTCCAACCTGGATCATACTCAAAGGCCTTCCTCCTCATCTCCTTACGGACGACGTTGTT GGATGGATTATTAGCCGCTATGGGCGCCCGGTCAACAACATTATCGGAGAGGGGCCTGGTTGCAAAGCTCTGCATCCTTTCTGCCAAGGGGGGGAGGGGG CACCTGATGCGTCTTGTAGGTCGCATGCTGGAGGGTGGGTGGTTGGAGATGCCAAGGCTTCTTGGCAAGTGGCGGCAGATCCTTCCATCCAAGGGAAGGA TTGTTCCTTGAGTCCTACGAGTTATGAGAAGTTGAAGAAATTGACGAAGGAGCTCGACACGCTAGTGGTTAGTGAGTATATGCCATCTGCGAAGGTGCAA CATACCAGGAGGAAGAATAAAAAATGGTAG
AA sequence Show only first row Show all	>Lus10026443 pacid=23176423 polypeptide=Lus10026443 locus=Lus10026443.g ID=Lus10026443.BGIv1.0 annot-version=v1.0 MVPKEIIDKGLQKMRSALVAQFIGSAPPMCNIASMLNRLLEYEGEVLVDLSSVKLCDWILRRAWHIHHSDIAPLDLEKKAVPTWIILKGLPPHLLTDDVV GWIISRYGRPVNNIIGEGPGCKALHPFCQGGEGAPDASCRSHAGGWVVGDAKASWQVAADPSIQGKDCSLSPTSYEKLKKLTKELDTLVVSEYMPSAKVQ HTRRKNKKW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10026443 [exp]	0	1
AT2G02130		PDF2.3, LCR68	low-molecular-weight cysteine-...		Lus10029544 [exp]	9.4	0.8569
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10013544 [exp]	10.1	0.8796
AT5G01870			Bifunctional inhibitor/lipid-t...		Lus10025148 [exp]	15.1	0.8600
AT5G45650			subtilase family protein (.1)		Lus10007083 [exp]	16.7	0.8604
AT1G76420	NAC	NAC368, CUC3, A...	CUP SHAPED COTYLEDON3, Arabido...		Lus10030723 [exp]	18.7	0.8708
AT3G53730			Histone superfamily protein (....		Lus10023331 [exp]	20.7	0.8620
AT2G45480	GRF	ATGRF9	growth-regulating factor 9 (.1...		Lus10009234 [exp]	33.8	0.8619
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Lus10036303 [exp]	36.0	0.7719
AT5G26650	MADS	AGL36	AGAMOUS-like 36 (.1)		Lus10007592 [exp]	37.2	0.7833
AT1G26680	B3	REM17	transcriptional factor B3 fami...		Lus10026921 [exp]	37.7	0.8432

Compare expression of checked genes

Lus10026443 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.