Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027613 [exp] 216 / 1e-65 ND / Lus10014851 [exp] 209 / 2e-62 ND 34 / 0.005 Lus10006886 [exp] 190 / 5e-56 ND / Lus10042979 [exp] 198 / 7e-56 AT5G08020 54 / 5e-07 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10017801 [exp] 183 / 2e-55 ND / Lus10007415 [exp] 159 / 8e-44 ND / Lus10017800 [exp] 147 / 4e-43 ND / Lus10007416 [exp] 142 / 2e-38 ND / Lus10029488 [exp] 124 / 3e-31 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026444 pacid=23176436 polypeptide=Lus10026444 locus=Lus10026444.g ID=Lus10026444.BGIv1.0 annot-version=v1.0 ATGTCTTTCATGTTTGCAGATTCCTTCGTTATGAGCCTTGCCTACTCCCCAGATTCCACTCCTTCAGAACATCGTATAGAGGGTTACACGGAACCGGATG ATGCTGAAGCAGTTCGTCCTCTTCTTAGACCAGGTGTTGTGTACAAGATTAAAAACCCTGTTGGTATTCGAGCACGCACTATCTTTCGCTCATGTCCAGG CGATTTCTCCCTCGCAATATTCCCTAACCACTTGCTCACAACCATCGATGAGTCTTCTCGCCACCGATTCTTCCCAGTCGACTCCTTCAACACCCTAACC TTGCCTGCTTTGCGTGCTCAACCAGCTGCTCGGACAAGTCCTACATATGTCGTTGGACGCCTATCGGCGGTGAACCTACCTATTTCTACCCTGTCTGGGG GAATCAACTTCAAACTTATTTTGGATCATCCCAGCAATGAACGCGTGGTCGTTCATTTCACCAACTTTCAAACACCTACAGCTCTTGATCTGCAAGACGT GATTGAAATTGAGCTCCTTCGACTTGTTATTTGCATTCTTACAGCTGTTGTTGTTTCAAATCCCACAGGTAATGCTACTCGTATCCTTACTACAGCTGGA AACGACACTTTATATGTCTTCGTAATGTATCCCTTCCCACTGCCACTGCCAGCTAAGGTCCTCACTATTCGCAATACCCAAGCATCACGGATTGTCTTCC CACCATTTGCGTCCCCTTTTCGCTCATACTTTGACATGTTTTCACACTTCCATGTTCCAGTTCGGGCCCTGCATCCAGCTATGACACACAAGTTCAGATT CCAGCGTGGTAACCTACCAGAGAAGATGTACCTTTCAGCCCTTCTAAATCGTCGTCCTCTAATGCCTCCCGACCGTAATGTGTGTATGCTCTTTTCAATC TTCTCCTACCGCTTAAATGTTTGGTTTTCACATAATGGAAACAACTTCTCCTTTCATTGTGACCAGCGTGCATGGTGTTTGATCCGGATACTTTCATTCA ACCGAGAATCAAGTAACACTGTCTGTGTTGATGGTCAGTTTAGGCATTTTGTTACTATGTGCAGCTATTCGGTTCTTGCTAGCTATGCGGATTCAACTGC TACAATAGACATTCTTTTCACTGGAACATCCGCTTGCCTTATGTTCTGTATGCTGGCTGATGAATATGTTCATTTGCCATATGAAGAAGAAAATGCGCTC TTGCTTGGACTGCATGGAAGCATTTTCATTGTCGAACTCCGCCCTGTTGATCCTGGACACATTGATCGCGCTAGGTTTGTGGCCACTACGATTTGGGATC CTGTTGCAGCCTACTACTAG
AA sequence Show only first row Show all	>Lus10026444 pacid=23176436 polypeptide=Lus10026444 locus=Lus10026444.g ID=Lus10026444.BGIv1.0 annot-version=v1.0 MSFMFADSFVMSLAYSPDSTPSEHRIEGYTEPDDAEAVRPLLRPGVVYKIKNPVGIRARTIFRSCPGDFSLAIFPNHLLTTIDESSRHRFFPVDSFNTLT LPALRAQPAARTSPTYVVGRLSAVNLPISTLSGGINFKLILDHPSNERVVVHFTNFQTPTALDLQDVIEIELLRLVICILTAVVVSNPTGNATRILTTAG NDTLYVFVMYPFPLPLPAKVLTIRNTQASRIVFPPFASPFRSYFDMFSHFHVPVRALHPAMTHKFRFQRGNLPEKMYLSALLNRRPLMPPDRNVCMLFSI FSYRLNVWFSHNGNNFSFHCDQRAWCLIRILSFNRESSNTVCVDGQFRHFVTMCSYSVLASYADSTATIDILFTGTSACLMFCMLADEYVHLPYEEENAL LLGLHGSIFIVELRPVDPGHIDRARFVATTIWDPVAAYY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10026444 [exp]	0	1
AT5G60210		RIP5	ROP interactive partner 5 (.1....		Lus10011643 [exp]	1.7	0.7960
AT2G29380		HAI3	highly ABA-induced PP2C gene 3...		Lus10001832 [exp]	2.4	0.7905
AT1G02816			Protein of unknown function, D...		Lus10009855 [exp]	3.2	0.7624
AT4G04980			unknown protein		Lus10018473 [exp]	11.7	0.7303
AT5G44230			Pentatricopeptide repeat (PPR)...		Lus10022090 [exp]	12.2	0.7266
AT2G45850	AT-hook		AT hook motif DNA-binding fami...		Lus10037858 [exp]	14.2	0.7918
AT4G24150	GRF	ATGRF8	growth-regulating factor 8 (.1...		Lus10033236 [exp]	15.1	0.7601
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10005663 [exp]	18.2	0.6780
AT2G01060	GARP		myb-like HTH transcriptional r...		Lus10004809 [exp]	18.5	0.6752
AT4G34500			Protein kinase superfamily pro...		Lus10040459 [exp]	19.6	0.7776

Compare expression of checked genes

Lus10026444 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.