Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72770 457 / 2e-156 HAB1 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) AT1G17550 444 / 2e-151 HAB2 homology to ABI2 (.1) AT5G57050 439 / 1e-150 AtABI2, ABI2 ABA INSENSITIVE 2, Protein phosphatase 2C family protein (.1.2) AT4G26080 433 / 2e-148 AtABI1, ABI1 ABA INSENSITIVE 1, Protein phosphatase 2C family protein (.1) AT1G07430 246 / 9e-76 HAI2 highly ABA-induced PP2C gene 2 (.1) AT2G29380 243 / 3e-75 HAI3 highly ABA-induced PP2C gene 3 (.1) AT3G11410 233 / 3e-71 ATPP2CA, AHG3 ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA, protein phosphatase 2CA (.1) AT5G51760 229 / 2e-69 AHG1 ABA-hypersensitive germination 1, Protein phosphatase 2C family protein (.1) AT5G59220 226 / 3e-68 SAG113, HAI1 senescence associated gene 113, highly ABA-induced PP2C gene 1 (.1) AT5G53140 158 / 9e-43 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025000 [exp] 968 / 0 AT1G72770 467 / 1e-160 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Lus10012962 [exp] 285 / 3e-91 AT4G26080 315 / 2e-104 ABA INSENSITIVE 1, Protein phosphatase 2C family protein (.1) Lus10040738 [exp] 248 / 3e-76 AT1G07430 429 / 7e-148 highly ABA-induced PP2C gene 2 (.1) Lus10016493 [exp] 245 / 2e-75 AT1G07430 421 / 2e-145 highly ABA-induced PP2C gene 2 (.1) Lus10034965 [exp] 231 / 1e-70 AT1G72770 249 / 3e-79 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Lus10004703 [exp] 229 / 3e-69 AT2G29380 392 / 3e-135 highly ABA-induced PP2C gene 3 (.1) Lus10040270 [exp] 224 / 2e-67 AT2G29380 390 / 1e-134 highly ABA-induced PP2C gene 3 (.1) Lus10019017 [exp] 194 / 9e-57 AT2G29380 280 / 3e-92 highly ABA-induced PP2C gene 3 (.1) Lus10003399 [exp] 181 / 1e-52 AT2G29380 252 / 2e-82 highly ABA-induced PP2C gene 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G224600 [exp] 665 / 0 AT1G72770 503 / 1e-174 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Potri.018G060300 [exp] 658 / 0 AT1G72770 493 / 8e-171 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Potri.003G044200 [exp] 519 / 2e-180 AT1G72770 576 / 0.0 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Potri.006G164632 [exp] 290 / 4e-93 AT4G26080 300 / 1e-98 ABA INSENSITIVE 1, Protein phosphatase 2C family protein (.1) Potri.015G018800 [exp] 247 / 5e-77 AT1G07430 236 / 2e-74 highly ABA-induced PP2C gene 2 (.1) Potri.015G133900 [exp] 238 / 4e-73 AT5G51760 338 / 1e-113 ABA-hypersensitive germination 1, Protein phosphatase 2C family protein (.1) Potri.012G131800 [exp] 238 / 6e-73 AT5G51760 332 / 3e-111 ABA-hypersensitive germination 1, Protein phosphatase 2C family protein (.1) Potri.008G059200 [exp] 237 / 9e-73 AT1G07430 362 / 1e-122 highly ABA-induced PP2C gene 2 (.1) Potri.009G037300 [exp] 236 / 5e-72 AT1G07430 401 / 2e-137 highly ABA-induced PP2C gene 2 (.1) Potri.012G002700 [exp] 228 / 2e-69 AT2G29380 225 / 8e-71 highly ABA-induced PP2C gene 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10026447 pacid=23176416 polypeptide=Lus10026447 locus=Lus10026447.g ID=Lus10026447.BGIv1.0 annot-version=v1.0 ATGGAGGACATGTACTCCCCGGTGTTGGTGCCATTTAGGGTAGGTAATTTAGCCTGTGATAACGTGACGCATTTGGATATCAAGAGGCAGAAGAAGATTA TGGCAGATGCTACCAGGCATCCAGATGCTCCTCAAACTGAAGTTTCTGAGGATAACGATTGTCATTGTGACTTGGGTAAGGAAGTTGGTGATGATGGAGT AGTTTTGGTTTCACAGCAAGAGGATGGAGTAGAAAGAGAAGCCATGTTGTTGGATATGATATCTGAGGTTGTCAATGATGACGGAACAAGTAGGGAAAGC GAGGAAGATGATTCCTTGTCATTCGAAGGTGATCAAAATCTTGAACTGGTTAGCTCTTGTTCCCTCTCGGTGACTAGTGAAACTAGTAGCTTACTTGGAG AAGAATTTTCTTGTTTCGAGGCCATCTTGGATTTTGGAACACCAAGTTTGCAAGATGTTGACAGGAGGAGCATCTGTGGTGTTGATAGTTTCACTAGTAC AGAGTTGGAGGAGTCAAGTAATTCACTATCTTTAGCAGTGAGCCATAGAGACGAGGTTACTACAACTTGTTCTGACCCAAACACAACAACTCCTCCGGCT GTAATTGAGTTGGCCCTGGAGAAAGAGGTTCGTGGAGGAACCATTGCACGTAGTGTCTTTGAGGTGGACTATGTGCCTCTCTGGGGTTTTACATCTGTAT GTGGGAGGAGACCAGAGATGGAGGATGCAGTTGCAACTGTGCCTCAGTTCCTGAAAATACCTATGCCAATGCTCATTGGTAATCAGGTGTTGGATGGTTT GAGCAAGTGTATAACTCATCAGACTGCTCATTTTTTCGGAGTCTATGATGGCCATGGAGGGTCACAGGTTGCAAACTACTGCCGTGAACGCGTCCATACT GCATTGGTTGAAGAGATTGCAACTGTTGAGAATAGCGTCATCATCGATGGTAGTGTAACAGATGGTTGCCAAGAGCAGTGGAGGAAAGCTTTCACAAATT GTTTTCTAAAAGTTGATGCTGAAATTGGCGGAGCAGAAGGCAGTGTTGAACCAGTTGCTCCAGAAACTGTTGGTTCTACTGCTGTTGTTGCTATTATTTG TTCCTCCCACATCATAGTAGCTAACTGTGGAGATTCAAGAGCTGTTTTGTGTCGCGGGAAAGAACCTATGGCGTTGTCCGTGGATCATAAACCGAATCGA GAAGATGAATATGCAAGGATAGAAGCAGCCGGAGGCAAGGTTATACAATGGAATGGGCATCGTGTCTTTGGTGTTCTTGCGATGTCGAGGTCCATTGGTG ATAGATATCTGAAGCCATGGATAATTCCAGAGCCAGAAGTGATGTTCATTCCACGAGCAAAAGAAGATGAATGTCTGATTCTGGCAAGTGACGGTTTGTG GGATGTGATGTCGAATGAGGAAGCATGCGATCTTGCTCGAAGAAGAATACTGGTGTGGCACAAGAAGAACGGGAGTGCAGGACCGAATCCTCCTCCTCCG ACGTCACCTGTTAAAGGGGAGGGGATTGACGCAGCGTCCCAGGCAGCAGCAGAGTACCTGTCGAACCGTGCCCTTCAGAAAGGGAGCAAGGATAACATCA CAGTCATCGTGGTGGACCTGAAACCACAAAGGAAGTTCAAGACAAAAACATGA
AA sequence Show only first row Show all	>Lus10026447 pacid=23176416 polypeptide=Lus10026447 locus=Lus10026447.g ID=Lus10026447.BGIv1.0 annot-version=v1.0 MEDMYSPVLVPFRVGNLACDNVTHLDIKRQKKIMADATRHPDAPQTEVSEDNDCHCDLGKEVGDDGVVLVSQQEDGVEREAMLLDMISEVVNDDGTSRES EEDDSLSFEGDQNLELVSSCSLSVTSETSSLLGEEFSCFEAILDFGTPSLQDVDRRSICGVDSFTSTELEESSNSLSLAVSHRDEVTTTCSDPNTTTPPA VIELALEKEVRGGTIARSVFEVDYVPLWGFTSVCGRRPEMEDAVATVPQFLKIPMPMLIGNQVLDGLSKCITHQTAHFFGVYDGHGGSQVANYCRERVHT ALVEEIATVENSVIIDGSVTDGCQEQWRKAFTNCFLKVDAEIGGAEGSVEPVAPETVGSTAVVAIICSSHIIVANCGDSRAVLCRGKEPMALSVDHKPNR EDEYARIEAAGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPEPEVMFIPRAKEDECLILASDGLWDVMSNEEACDLARRRILVWHKKNGSAGPNPPPP TSPVKGEGIDAASQAAAEYLSNRALQKGSKDNITVIVVDLKPQRKFKTKT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72770		HAB1	HYPERSENSITIVE TO ABA1, homolo...		Lus10026447 [exp]	0	1
AT1G05170			Galactosyltransferase family p...		Lus10006782 [exp]	1.4	0.6668
AT1G72770		HAB1	HYPERSENSITIVE TO ABA1, homolo...		Lus10025000 [exp]	11.2	0.6038
AT3G03810		EDA30	embryo sac development arrest ...		Lus10013612 [exp]	12.1	0.6646
AT4G28450			nucleotide binding;protein bin...		Lus10015673 [exp]	13.0	0.6556
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10042180 [exp]	20.0	0.6538
AT5G17260	NAC	ANAC086	NAC domain containing protein ...		Lus10010096 [exp]	22.4	0.6520
AT2G03620		AtMRS2-5, AtMGT...	magnesium transporter 3 (.1.2)		Lus10036901 [exp]	24.2	0.6155
AT1G27760		SAT32, ATSAT32	SALT-TOLERANCE 32, interferon-...		Lus10018689 [exp]	27.5	0.6399
AT2G33710	AP2_ERF		Integrase-type DNA-binding sup...		Lus10016245 [exp]	29.4	0.5351
AT2G34930			disease resistance family prot...		Lus10002753 [exp]	34.6	0.5824

Compare expression of checked genes

Lus10026447 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.