Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26180 535 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G13180 81 / 5e-16 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein (.1) AT5G55920 79 / 3e-15 OLI2 OLIGOCELLULA 2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G26600 74 / 1e-13 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G06560 72 / 4e-13 NOL1/NOP2/sun family protein (.1) AT5G66180 51 / 1e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025004 [exp] 941 / 0 AT5G26180 566 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10016622 [exp] 90 / 8e-19 AT3G13180 759 / 0.0 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein (.1) Lus10032368 [exp] 77 / 1e-14 AT4G26600 736 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10023095 [exp] 76 / 2e-14 AT4G26600 736 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10022523 [exp] 70 / 6e-13 AT3G13180 323 / 1e-107 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein (.1) Lus10020761 [exp] 65 / 6e-11 AT1G06560 714 / 0.0 NOL1/NOP2/sun family protein (.1) Lus10007337 [exp] 65 / 8e-11 AT1G06560 725 / 0.0 NOL1/NOP2/sun family protein (.1) Lus10041897 [exp] 48 / 2e-05 AT4G10770 1097 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Lus10028444 [exp] 47 / 3e-05 AT5G66180 534 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G224000 [exp] 645 / 0 AT5G26180 585 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.001G368500 [exp] 82 / 2e-16 AT3G13180 770 / 0.0 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein (.1) Potri.001G369600 [exp] 77 / 1e-14 AT4G26600 696 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G204900 [exp] 64 / 2e-10 AT1G06560 758 / 0.0 NOL1/NOP2/sun family protein (.1) Potri.007G056800 [exp] 51 / 9e-07 AT5G66180 502 / 2e-178 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01189 [flax] [poplar] Methyltr_RsmB-F 16S rRNA methyltransferase RsmB/F
Representative CDS sequence Show only first row Show all	>Lus10026452 pacid=23176449 polypeptide=Lus10026452 locus=Lus10026452.g ID=Lus10026452.BGIv1.0 annot-version=v1.0 ATGAAACCCTCCACTACCAAGCCAAAGCAAGCCGGATTCACCGGAAAATCGGAGCACCGTAGATTGAACAATGTTGATCGATCGGCATACTTTGCCCGGA GAGAAGCCTCCAAGGTCTTACGGAGTGCTCTTCAAGGAGACGCTCGGCGGCGAGCAGCTTTTTCCATCAAATCCCTCGTTTATGGCCCTTCAGTCAGAAA CAAAAAGGCAACTTTCGCTCTGGTCTGCCAAACCCTCAAGCACCTTCGCATTATCAAGGAAGTCTTGGAGTCTAGCAATATACTGAACAGCAAATGGAAG AAACAAGAGGAACTGATGTACATAATGACATATGATATTCTCTTTGGAAAGGAGACTTCATTGACTGGTGGTGATGCGGAGAAGTTTCTCATGCTTAGGA AACAAGCATTGCAGACTGCTCTTGCAAAGCTTCTAGTCAGCAAAAAGGTCAAACACGTTGATGATCTGGTTTCTCTTTATCAACCTCCAGATATATTGAA ACCTTGTTATGTCCGTGTAAATACTCTGAAGAGCGATTTTGATTCTTCTTTACACCAACTAAGCAAGCAGTTCAGGGTTGAAAGGGATGCCGTGGTTCCT AACTTGCTGATACTGCCACCGAATACTGATTTGCACAATCATCCTCTTGTTTTGGATGGAAGTGTCTTTGTGCAAGGCAGAGCAAGTTCAATGGTTGCTG CAGCTCTTGATCCCCAGCCTGGATGGAAAGTTCTTGATGCATGTGCAGCTCCGGGAAATAAAACTGTTCACCTTGCTGCTCTCATGAACGGAAAGGGAAA AATCGTTGCATGTGAACTGAATAAAGACAGAATTAAACGCCTGGAAGATACTGTTCTACTTTCTGGTGCCAGAATTGGTGATGTATGCTTGTCAACCTTG ACAAGGCTTGTAGACATTGAAGTTTTGCATGGGGATTTCCTGAGTCTTGACCCGCAAGATCCTTCATTCAGCCAGGTCCGTGCTATTCTTCTAGATCCTT CTTGCTCTGGATCTGGTACTTCCGCTCAAAGATTAGACCATCTACTACCTTCTCATTCTACCCATGATGTTGATACAGAGAGACTAAACAAGCTTGCAGC TTTTCAGAGGAAGACTCTGACCCATGCTTTATCCTTTCTGGGTGTCGAGAGAGTAGTATACAGCACGTGCTCAGTGAATCAAACTGAGAACGAAGATGTG GTGAGTGCGGTTCTCCCATTGGCATCGTCACTTGGCTTTGAGCTGTCAACTCCCTTTCCTCAGTGGAAGTGCCGTGGTCTCCCTGTTGTTGAAGGCTCAG AACATTTGCTGCGCATGGATCCAGCTGAACACAAAGAAGGCTTCTTCATTGCTCTTTTTGTTAAGAAAGGTAGCAGCAGCATTAGAAGATGCGAAGTCAA TTCTAATCCTGAGATGAACTACGGCGGTAGAAAGAGAAATAGCCGTGGCAGTGCCCCTTTCTTATTGTGGAATAGGATGTGGAGAATGTCTCCTTTTGGT TGGCAAAGAAGACGGAAACTGCAACATGAGTTATAA
AA sequence Show only first row Show all	>Lus10026452 pacid=23176449 polypeptide=Lus10026452 locus=Lus10026452.g ID=Lus10026452.BGIv1.0 annot-version=v1.0 MKPSTTKPKQAGFTGKSEHRRLNNVDRSAYFARREASKVLRSALQGDARRRAAFSIKSLVYGPSVRNKKATFALVCQTLKHLRIIKEVLESSNILNSKWK KQEELMYIMTYDILFGKETSLTGGDAEKFLMLRKQALQTALAKLLVSKKVKHVDDLVSLYQPPDILKPCYVRVNTLKSDFDSSLHQLSKQFRVERDAVVP NLLILPPNTDLHNHPLVLDGSVFVQGRASSMVAAALDPQPGWKVLDACAAPGNKTVHLAALMNGKGKIVACELNKDRIKRLEDTVLLSGARIGDVCLSTL TRLVDIEVLHGDFLSLDPQDPSFSQVRAILLDPSCSGSGTSAQRLDHLLPSHSTHDVDTERLNKLAAFQRKTLTHALSFLGVERVVYSTCSVNQTENEDV VSAVLPLASSLGFELSTPFPQWKCRGLPVVEGSEHLLRMDPAEHKEGFFIALFVKKGSSSIRRCEVNSNPEMNYGGRKRNSRGSAPFLLWNRMWRMSPFG WQRRRKLQHEL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26180			S-adenosyl-L-methionine-depend...		Lus10026452 [exp]	0	1
AT5G58450			Tetratricopeptide repeat (TPR)...		Lus10042248 [exp]	3.3	0.9142
AT5G13680		AtELP1, ELO2, A...	ELONGATA 2, ABA-OVERLY SENSITI...		Lus10040306 [exp]	7.7	0.8851
AT5G26830			Threonyl-tRNA synthetase (.1)		Lus10005351 [exp]	10.5	0.8857
AT5G64580		EMB3144	EMBRYO DEFECTIVE 3144, AAA-typ...		Lus10033496 [exp]	15.7	0.8792
AT5G40410			Tetratricopeptide repeat (TPR)...		Lus10005637 [exp]	15.8	0.8426
AT3G06530			ARM repeat superfamily protein...		Lus10039121 [exp]	16.2	0.8852
AT3G29230			Tetratricopeptide repeat (TPR)...		Lus10019797 [exp]	16.8	0.8836
AT3G07050		NSN1	nucleostemin-like 1, GTP-bindi...		Lus10018858 [exp]	18.0	0.8646
AT1G77550			tubulin-tyrosine ligases;tubul...		Lus10027620 [exp]	18.4	0.8664
AT2G34970			Trimeric LpxA-like enzyme (.1)		Lus10018991 [exp]	19.3	0.8398

Compare expression of checked genes

Lus10026452 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.