Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12020 144 / 1e-44 HSP17.6II 17.6 kDa class II heat shock protein (.1) AT5G12030 132 / 8e-40 AT-HSP17.6A heat shock protein 17.6A (.1) AT1G53540 72 / 4e-16 HSP20-like chaperones superfamily protein (.1) AT1G54050 71 / 4e-16 HSP20-like chaperones superfamily protein (.1) AT1G07400 65 / 1e-13 HSP20-like chaperones superfamily protein (.1) AT1G59860 64 / 2e-13 HSP20-like chaperones superfamily protein (.1) AT5G59720 63 / 1e-12 HSP18.2 HSP18.1CI heat shock protein 18.2 (.1) AT4G10250 62 / 4e-12 ATHSP22.0 HSP20-like chaperones superfamily protein (.1) AT3G46230 59 / 3e-11 ATHSP17.4 ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 17.4, heat shock protein 17.4 (.1) AT2G29500 54 / 1e-09 HSP20-like chaperones superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025005 [exp] 255 / 7e-88 AT5G12020 166 / 2e-53 17.6 kDa class II heat shock protein (.1) Lus10042408 [exp] 77 / 1e-17 AT4G10250 154 / 1e-47 HSP20-like chaperones superfamily protein (.1) Lus10026262 [exp] 71 / 2e-15 AT4G10250 152 / 5e-47 HSP20-like chaperones superfamily protein (.1) Lus10000932 [exp] 71 / 2e-15 AT4G10250 200 / 2e-65 HSP20-like chaperones superfamily protein (.1) Lus10040560 [exp] 66 / 2e-13 AT4G10250 200 / 1e-65 HSP20-like chaperones superfamily protein (.1) Lus10040723 [exp] 59 / 2e-11 AT2G29500 219 / 3e-74 HSP20-like chaperones superfamily protein (.1) Lus10040722 [exp] 59 / 2e-11 AT1G07400 214 / 2e-72 HSP20-like chaperones superfamily protein (.1) Lus10016457 [exp] 58 / 7e-11 AT1G07400 216 / 4e-73 HSP20-like chaperones superfamily protein (.1) Lus10016456 [exp] 58 / 8e-11 AT1G07400 213 / 8e-72 HSP20-like chaperones superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G223900 [exp] 181 / 5e-59 AT5G12020 154 / 8e-49 17.6 kDa class II heat shock protein (.1) Potri.003G071100 [exp] 80 / 2e-19 AT1G54050 159 / 2e-50 HSP20-like chaperones superfamily protein (.1) Potri.009G147900 [exp] 76 / 8e-18 AT2G29500 193 / 5e-64 HSP20-like chaperones superfamily protein (.1) Potri.004G187450 [exp] 76 / 9e-18 AT2G29500 221 / 5e-75 HSP20-like chaperones superfamily protein (.1) Potri.009G148000 [exp] 76 / 1e-17 AT2G29500 190 / 7e-63 HSP20-like chaperones superfamily protein (.1) Potri.019G081250 [exp] 75 / 3e-17 AT2G29500 182 / 6e-60 HSP20-like chaperones superfamily protein (.1) Potri.009G049800 [exp] 74 / 4e-17 AT2G29500 152 / 4e-48 HSP20-like chaperones superfamily protein (.1) Potri.004G187400 [exp] 74 / 4e-17 AT1G07400 193 / 7e-64 HSP20-like chaperones superfamily protein (.1) Potri.009G049900 [exp] 72 / 3e-16 AT2G29500 154 / 2e-48 HSP20-like chaperones superfamily protein (.1) Potri.010G175200 [exp] 69 / 5e-15 AT1G53540 107 / 5e-30 HSP20-like chaperones superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [flax] [poplar] HSP20 PF00011 [flax] [poplar] HSP20 Hsp20/alpha crystallin family
Representative CDS sequence Show only first row Show all	>Lus10026453 pacid=23176424 polypeptide=Lus10026453 locus=Lus10026453.g ID=Lus10026453.BGIv1.0 annot-version=v1.0 ATGGATCTGCGATTCCTTGGAATCGACTACCCAGTGCTGCAAACTCTGCACCAGATGATGGACAACATGGTCGACGACCACGAGGGGGACACCAACAGCA GCGGAGGCGGCGGGGGAGGAAACAAGACTTCTCGAGCGGCGACTAGGAGATACCTCAGGGACGCAAAGGCGATGGCGGCGACGCCCGCTGATGTGAAGGA GTACCCGAATTCGTACGTGTTCGTGTTAGACATGCCGGGGCTGAAGTCGGCGGACATAAAGGTGCAGGTGGAAGAAGACAACATGCTGACAATAAGCGGC GAGAGGAAGAGGGAAGAGGACAAGGAGGAAGGTGCAAAGTACGTGAGAATGGAGAGGAGGCTCGGGAAGCTGATGAGGAAGTTTGTGCTGCCGGAGAATG CTAACACCGACGCCATTTCAGCTGTGTGTAAGGATGGGGTGTTGACTGTTACCGTTGAGAAGGTGCCTCCTCCTGAACCCAAGAAGCCCAAGACCATCCA TGTCCAGATCGCCTGA
AA sequence Show only first row Show all	>Lus10026453 pacid=23176424 polypeptide=Lus10026453 locus=Lus10026453.g ID=Lus10026453.BGIv1.0 annot-version=v1.0 MDLRFLGIDYPVLQTLHQMMDNMVDDHEGDTNSSGGGGGGNKTSRAATRRYLRDAKAMAATPADVKEYPNSYVFVLDMPGLKSADIKVQVEEDNMLTISG ERKREEDKEEGAKYVRMERRLGKLMRKFVLPENANTDAISAVCKDGVLTVTVEKVPPPEPKKPKTIHVQIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12020		HSP17.6II	17.6 kDa class II heat shock p...		Lus10026453 [exp]	0	1
AT1G74310		HOT1, ATHSP101	heat shock protein 101 (.1)		Lus10040527 [exp]	4.4	0.9311
AT1G30070			SGS domain-containing protein ...		Lus10038500 [exp]	4.5	0.9284
AT3G07090			PPPDE putative thiol peptidase...		Lus10038168 [exp]	5.7	0.8985
AT1G74310		HOT1, ATHSP101	heat shock protein 101 (.1)		Lus10021159 [exp]	7.5	0.9262
AT4G25200		ATHSP23.6-MITO	mitochondrion-localized small ...		Lus10031154 [exp]	8.1	0.9180
AT1G16810			unknown protein		Lus10026960 [exp]	10.1	0.8942
AT4G30480		TPR1, AtTPR1	tetratricopeptide repeat 1, Te...		Lus10035117 [exp]	10.2	0.8786
AT1G07400			HSP20-like chaperones superfam...		Lus10016456 [exp]	10.2	0.9200
AT3G55530		SDIR1	SALT- AND DROUGHT-INDUCED RING...		Lus10001568 [exp]	10.8	0.9060
AT5G08060			unknown protein		Lus10021149 [exp]	12.2	0.9049

Compare expression of checked genes

Lus10026453 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.