Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19530 464 / 7e-165 ACL5 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G23820 124 / 3e-32 SPDS1 spermidine synthase 1 (.1.2) AT1G70310 119 / 3e-30 SPDS2 spermidine synthase 2 (.1) AT5G53120 96 / 6e-22 SPMS, SPDS3, ATSPDS3 spermidine synthase 3 (.1.2.3.4.5.6)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004913 [exp] 413 / 1e-144 AT5G19530 441 / 2e-156 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10010538 [exp] 411 / 2e-143 AT5G19530 439 / 1e-155 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10033437 [exp] 387 / 7e-134 AT5G19530 410 / 1e-143 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10000469 [exp] 377 / 9e-130 AT5G19530 407 / 2e-142 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10030629 [exp] 112 / 4e-28 AT1G70310 531 / 0.0 spermidine synthase 2 (.1) Lus10030861 [exp] 112 / 1e-27 AT1G23820 514 / 0.0 spermidine synthase 1 (.1.2) Lus10029169 [exp] 111 / 2e-27 AT1G23820 562 / 0.0 spermidine synthase 1 (.1.2) Lus10012996 [exp] 103 / 1e-24 AT1G23820 537 / 0.0 spermidine synthase 1 (.1.2) Lus10039416 [exp] 102 / 2e-24 AT1G23820 509 / 0.0 spermidine synthase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G222200 [exp] 486 / 4e-173 AT5G19530 533 / 0.0 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.010G089200 [exp] 408 / 2e-142 AT5G19530 447 / 2e-158 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.008G151800 [exp] 405 / 1e-141 AT5G19530 445 / 7e-158 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.010G094600 [exp] 113 / 3e-28 AT1G70310 538 / 0.0 spermidine synthase 2 (.1) Potri.008G147200 [exp] 113 / 3e-28 AT1G70310 532 / 0.0 spermidine synthase 2 (.1) Potri.012G002600 [exp] 95 / 1e-21 AT5G53120 582 / 0.0 spermidine synthase 3 (.1.2.3.4.5.6) Potri.015G018900 [exp] 82 / 4e-17 AT5G53120 545 / 0.0 spermidine synthase 3 (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01564 [flax] [poplar] Spermine_synth Spermine/spermidine synthase domain
Representative CDS sequence Show only first row Show all	>Lus10026457 pacid=23176452 polypeptide=Lus10026457 locus=Lus10026457.g ID=Lus10026457.BGIv1.0 annot-version=v1.0 ATGGGTGAGGCTGTTGAGATGTTTGATACAGTATGCACTACTACTACCTTCCCTAAACTCATAAACGGTAACCATGTCATCCTCCCAACTTCAGTATTCC GGCATGATGATCAGTTCCTAACACTCACCACCACTGCTAATCCCAACATTAATACTGATGATCAGTACTCTTGTAATAATATGCATCCTACTACTGCTGC CTGGTATGAGGAATCCCTTGACCACTACCTCAAATGGTCCTTCGCTTTGAACCGAGTGCTGCAGAAGGCAACTAGCGAGTTTCAGGACATTGCTCTTCTC GACACTAAGCCTTTTGGCAAGGCGCTGGTTATAGATGGGAAGATGCAGAGCGCGGAAGCAGATGAGTTCGTTTACCATGAATGTCTTGTTCATCCTTCTC TCCTTTCCCACCCCTTGCCCAGAAATGTATTCATCATGGGAGGAGGTGAAGGTTCCACCGCTAGAGAAGCCCTCAAGCACAACACCGTCCACAAAGTGGT TATGTGCGATATTGACAAGGAAGTGGTTGAATTCTGCCGCACCCATCTTACTATGAACCATCAGGCTTTCTCCAACACCAAGCTTCATTTAGTCATTAAT GACGCCAAGGCTGAGCTGGAGAAAAGGGAAGAGAAGTTTGACATAATAGTGGGAGATCTGGCAGACCCAGTGGAAGGAGGACCTTGCTACCAACTTTACA CCAAAACATTCTACGACACCGTTCTCAAGCCTAAGCTCTCTCCCAATGGCATCTTTGTCACTCAGGCAGGGCCAGCAGGTATTTTGACTCACAAACAAGT CTTCTCTTCCATATACAACACACTCGAGCATGTCTTCAAATATGTGGTAGCATACAGTGCTCATGTGCCATCTTTTGCTGACACGTGGGGCTGGGTCATG GCATCTGACGAACCATTAGAAGTGGTGAAGAAGGGAGATGAAATAGACAAAAGGATTGAAGAGAGAATCAAAGGAGATCAGCTACTCTACCTAAATGGTG CATCTCTGCTCTCCTCTGCCACCCTCAACAAGGCTGTTTCACTCTCACTGATGAAGGAGACTCATGTGTACACTGAAGATGATGCAAGGTTCCTCCATGG ACATGGTGTTGCTTCTTCCTCCAGAAACTGA
AA sequence Show only first row Show all	>Lus10026457 pacid=23176452 polypeptide=Lus10026457 locus=Lus10026457.g ID=Lus10026457.BGIv1.0 annot-version=v1.0 MGEAVEMFDTVCTTTTFPKLINGNHVILPTSVFRHDDQFLTLTTTANPNINTDDQYSCNNMHPTTAAWYEESLDHYLKWSFALNRVLQKATSEFQDIALL DTKPFGKALVIDGKMQSAEADEFVYHECLVHPSLLSHPLPRNVFIMGGGEGSTAREALKHNTVHKVVMCDIDKEVVEFCRTHLTMNHQAFSNTKLHLVIN DAKAELEKREEKFDIIVGDLADPVEGGPCYQLYTKTFYDTVLKPKLSPNGIFVTQAGPAGILTHKQVFSSIYNTLEHVFKYVVAYSAHVPSFADTWGWVM ASDEPLEVVKKGDEIDKRIEERIKGDQLLYLNGASLLSSATLNKAVSLSLMKETHVYTEDDARFLHGHGVASSSRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19530		ACL5	ACAULIS 5, S-adenosyl-L-methio...		Lus10026457 [exp]	0	1
AT5G25220	HD	KNAT3	KNOTTED1-like homeobox gene 3 ...		Lus10006291 [exp]	6.3	0.8647
AT3G17940			Galactose mutarotase-like supe...		Lus10000452 [exp]	9.0	0.8517
AT4G35840			RING/U-box superfamily protein...		Lus10028406 [exp]	24.7	0.8139
AT1G68810	bHLH	bHLH030	basic helix-loop-helix (bHLH) ...		Lus10034271 [exp]	28.6	0.8449
					Lus10039819 [exp]	44.0	0.8320
AT1G13960	WRKY	WRKY4	WRKY DNA-binding protein 4 (.1...		Lus10030424 [exp]	83.7	0.7835
AT4G21620			glycine-rich protein (.1.2)		Lus10011230 [exp]	132.2	0.7937
AT2G45400		BEN1	NAD(P)-binding Rossmann-fold s...		Lus10004028 [exp]	187.5	0.7731
AT2G42730			F-box family protein (.1.2)		Lus10028722 [exp]	197.2	0.7682
AT2G36970			UDP-Glycosyltransferase superf...		Lus10021437 [exp]	276.4	0.7595

Compare expression of checked genes

Lus10026457 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.