Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19060 673 / 0 unknown protein AT3G06150 641 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034027 [exp] 767 / 0 AT3G06150 743 / 0.0 unknown protein Lus10004424 [exp] 752 / 0 AT3G06150 747 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G202500 [exp] 717 / 0 AT3G06150 721 / 0.0 unknown protein Potri.010G030900 [exp] 715 / 0 AT3G06150 739 / 0.0 unknown protein Potri.008G202400 [exp] 713 / 0 AT3G06150 734 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026459 pacid=23176457 polypeptide=Lus10026459 locus=Lus10026459.g ID=Lus10026459.BGIv1.0 annot-version=v1.0 ATGCTGGAAAAAGCAGAGAACAATTCAAAGACAAAAGTATACCAACAACAATTAGTGTCCAATCCTGTACATCAATGGCGACTTGATATTTTGATTGCTC TAGCTTTTGTGGGCATGGTGGTAGTTTGGAGTATTGACAGTTGTACCATAAGGAATTCCATTGAAGTATGGAGTTTCAAGAAGCAGATGATGGTTCATCC CCAATCCACCATTCTTGATTCAGAGATTATTCCCCTTAGCCAAGAAGATTCAGATCAAATAATCAGCAACCGTAGATTTGCAAAATGGGCGACAACGGAA CTAGAGCCCAATTTCACGGCTACCCTTGTCTCCCGGTGGCTAGCTCCAGCTTGTACTGAGGAACAGACGATGGAGGTTGTGATTCCAGATATGGATGGAA AAGGTATTTTGGAACTAACGACGGGAGACACCCACCGATTCATTTTCCATGCAGTAAGTGAGTCGAATAACCTTAGTTGTTCCGGTGGGGATTACTTTGA GTCAGATCTTTCAGGAGAGTCGTGGAAGTCTCGTCCTCTAATCCAAGATTTAGGAAATGGGTCTTACTCAATTACCCTTCAAGTTCACCCTGATTTCGCC GGTGATAATTACTATCTCACTCTATTCCTGCTTTTCCGTCATTTCCAAGGCCTGAAATTATTGCCCAACAGATTTGCTGTCACCAAGAAACTGCGGAACT TCCAAATCAGGTTTGTTAGAGGGCAGAGTAACTTGCCGGCGTTGAAAACATGTGGGGAATCCGACTTCAGAAGAGAGTTATGGGTTGGGAGATGGACTAG GCATGCTAAAAATGAGGATTGCAAGATTAGTGAAAATGGCCGATTCCGATGTTTGGATCCTCATTTTCCTTGCGAGCGATCGTGGTGTGATGGATGGTTA GGTTCATTGGAGAGCAATGGTTGGGTTTATTCAACACACTGCTCCTTTAGGATCTTCCAAGCTGATTCGGCTTGGAATTGCCTAAGGAACAAGTGGATCT TCTTCTCCGGTGATTCCAACCATGTTGACTCTATCAGAAACTTGCTTAATTTTGTATTAGATTTGCCTGATGTGAAATCAGTTCCAAGACGGTTTGATTT GAACTTCACCAATCCTAAGGATACTTCTCAATCAGTTAGGATTACTAGCATTTTCAATGGTCACTGGAACGATACGCAAAACGGAATGGGTCTTGATTCA TTTAGAGATGAAGGGTTTAGAAACCTTGTGAAAAGGTACTTCGTTGAGGAAGAAACTGTGCCAGATACCATAATCATGAACTCGGGCCTGCACGATGGGG TACACAGCCGAAATGTTGAGAAATTTGCGGCAGGAGCTGATAATGCGGCTAGGTTCTGGAAGGAGGTTATGGATTCTGTGAGGGAGAGAGGCATGGTAGC TCCCAAGATGATTTACAGGACAACCGTGGCTCCTGCTGGGACATCAAGGGTATCTCAGTTGAATCCAAGTAAGATGGAGGCTTTTAATTGGATGATATTG GAAAACTTCAGGAGAGCAGGACTTCTTGCTGGTGTGATTGATAACTTCGACATGACATTCCCATGGCATTTCAACAACCGGTGCAGTGATGGACAACATT ATGGTAGACCTCCATCCAATATAATATGGAAGGATGGTGAGATCGGGCATCAGTACTTTGTGGACATTATGTTGCTTCATGTGTTGCTCAATGTCTTGTG TTCAACATAA
AA sequence Show only first row Show all	>Lus10026459 pacid=23176457 polypeptide=Lus10026459 locus=Lus10026459.g ID=Lus10026459.BGIv1.0 annot-version=v1.0 MLEKAENNSKTKVYQQQLVSNPVHQWRLDILIALAFVGMVVVWSIDSCTIRNSIEVWSFKKQMMVHPQSTILDSEIIPLSQEDSDQIISNRRFAKWATTE LEPNFTATLVSRWLAPACTEEQTMEVVIPDMDGKGILELTTGDTHRFIFHAVSESNNLSCSGGDYFESDLSGESWKSRPLIQDLGNGSYSITLQVHPDFA GDNYYLTLFLLFRHFQGLKLLPNRFAVTKKLRNFQIRFVRGQSNLPALKTCGESDFRRELWVGRWTRHAKNEDCKISENGRFRCLDPHFPCERSWCDGWL GSLESNGWVYSTHCSFRIFQADSAWNCLRNKWIFFSGDSNHVDSIRNLLNFVLDLPDVKSVPRRFDLNFTNPKDTSQSVRITSIFNGHWNDTQNGMGLDS FRDEGFRNLVKRYFVEEETVPDTIIMNSGLHDGVHSRNVEKFAAGADNAARFWKEVMDSVRERGMVAPKMIYRTTVAPAGTSRVSQLNPSKMEAFNWMIL ENFRRAGLLAGVIDNFDMTFPWHFNNRCSDGQHYGRPPSNIIWKDGEIGHQYFVDIMLLHVLLNVLCST

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19060			unknown protein		Lus10026459 [exp]	0	1
					Lus10032581 [exp]	1.0	0.8790
AT1G62400		HT1	high leaf temperature 1, Prote...		Lus10020018 [exp]	2.8	0.8647
AT2G01290		RPI2	ribose-5-phosphate isomerase 2...		Lus10036094 [exp]	12.8	0.8296
AT1G10380			Putative membrane lipoprotein ...		Lus10037237 [exp]	17.8	0.8125
AT1G60890			Phosphatidylinositol-4-phospha...		Lus10012689 [exp]	18.4	0.7889
AT5G14090			unknown protein		Lus10037042 [exp]	24.4	0.8081
AT1G77690		LAX3	like AUX1 3 (.1)		Lus10028078 [exp]	27.0	0.7589
AT4G19510			Disease resistance protein (TI...		Lus10008209 [exp]	28.7	0.8068
AT5G10140	MADS	FLF, AGL25, FLC	FLOWERING LOCUS F, FLOWERING L...		Lus10037039 [exp]	30.5	0.7798
AT1G55840			Sec14p-like phosphatidylinosit...		Lus10022533 [exp]	30.9	0.8002

Compare expression of checked genes

Lus10026459 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.