Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38470 178 / 2e-50 STY46 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) AT4G35780 176 / 6e-50 STY17 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) AT1G14000 166 / 7e-47 VIK VH1-interacting kinase (.1) AT2G17700 167 / 2e-46 STY8 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) AT5G11850 165 / 8e-45 Protein kinase superfamily protein (.1) AT1G08720 162 / 1e-43 EDR1, ATEDR1 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) AT1G62400 153 / 6e-43 HT1 high leaf temperature 1, Protein kinase superfamily protein (.1) AT1G73660 159 / 1e-42 protein tyrosine kinase family protein (.1) AT5G03730 157 / 4e-42 AtCTR1, SIS1, CTR1 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) AT4G31170 152 / 4e-42 Protein kinase superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025010 [exp] 709 / 0 AT4G35780 178 / 1e-49 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10022653 [exp] 184 / 3e-53 AT4G38470 673 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10012517 [exp] 185 / 9e-53 AT4G35780 754 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10023989 [exp] 176 / 9e-50 AT4G38470 771 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10025092 [exp] 176 / 3e-48 AT1G78610 779 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10018895 [exp] 164 / 1e-45 AT4G35780 508 / 1e-175 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10004153 [exp] 164 / 2e-44 AT2G17700 611 / 0.0 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) Lus10026626 [exp] 158 / 6e-44 AT1G14000 748 / 0.0 VH1-interacting kinase (.1) Lus10030435 [exp] 157 / 6e-44 AT1G14000 748 / 0.0 VH1-interacting kinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G222600 [exp] 506 / 4e-179 AT4G35780 175 / 1e-48 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179100 [exp] 192 / 9e-57 AT4G35780 612 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179457 [exp] 189 / 6e-56 AT4G38470 654 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.009G139400 [exp] 190 / 5e-55 AT4G38470 807 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179514 [exp] 188 / 2e-54 AT4G38470 786 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.005G106200 [exp] 180 / 3e-51 AT4G35780 821 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.005G246500 [exp] 178 / 1e-50 AT4G38470 645 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.005G190200 [exp] 177 / 3e-50 AT4G38470 500 / 2e-172 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.007G060600 [exp] 174 / 4e-49 AT4G35780 793 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.002G070000 [exp] 171 / 5e-48 AT4G38470 498 / 1e-171 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10026461 pacid=23176450 polypeptide=Lus10026461 locus=Lus10026461.g ID=Lus10026461.BGIv1.0 annot-version=v1.0 ATGGAAAAGCAGAAGGAGATGAGGATAATGTACAAAAAGAGGATGGAGAGGACCCAAGATTACCTCAGATTCTGCCTTCAAACTGCACAAGACCATGGCT TCCTTGACCTCATCATTGGCAACCAAGACTCCTCCTCCTGCTGCAACATCTCTTCTGGGACTGGGACTCCCAATTCTACCAGTCCGAGATATACTACAGC AATTCAGCAAGAACAACAACAACCACCATCACCATTGGTAGTCCACTCTCATCTTTCCTCACTCATCAACCAGGCAAACTTCAGTGGATGGTACATCCAT CCCAATGAGATAGAGTTGAAAGAGAAGATAGGTGAAGGCAGCACTGCAGAGATATACAAAGGACTTTGGAGAGGGTTGGAAGTTGCTGTCAAGTGCATCG TCCCTCATTTCTTCAACGAGAGTACTGGCGTCACTTTCTTCGCTCAGGAACTCGATACTCTCTCTAGACAACGACACCGTTTCATCCTCCAGTTCTTCGG TGCCTCCCTGGATCCACCAAACCACGCCTGGGTGGTCACAGAGTCCTTAGAAACAACGCTCAAGGAATGGTTACATGGACCTGGAAGCAGGAAAAAGGAA AGGTCTTTTCCTTTGCCTCCCTTCTTGGAGAGGCTGGCAAGGGCTGTTGAGATTTCTCAGGCTATGCAGTATCTCCACCAGCAGAAGCCTAATAAGGTCA TCCATCGAGATCTCAAACCAAGTAACATCTTCTTGGACGATGCCAATCATGTCAGGGTTGCTGACTTTGGGCACGCTCGTTTCTTGGAGGACACTCAAAT GGCACTCACCGGCGAGACAGGAACCTATGTGTACATGGCGCCAGAGGTGATCTCTTGTCAGCCTTACAATGAGAAATGTGATGTCTACAGTTTTGCGGTC ATTCTGAATGAGATTATCACTGGAAACTATCCTTACGTTGACACAGATTTTGGTCCTACCAAGATAGCAATGCAAGTTGCAGATGGTAGCCTGAGGCCTG CGCTACCAGCAGACGAAGACGGCCAACTGGCGGAGCTAATTGATCTCATATGTGTGTCCTGGGATCAAGATCCGTCCCTTAGACCCTCTTTTGCTACCAT TACTTCCGCTCTCAAGGAAATTCAATCAACCGTCGAATCACATATTCCACAGAGTTAG
AA sequence Show only first row Show all	>Lus10026461 pacid=23176450 polypeptide=Lus10026461 locus=Lus10026461.g ID=Lus10026461.BGIv1.0 annot-version=v1.0 MEKQKEMRIMYKKRMERTQDYLRFCLQTAQDHGFLDLIIGNQDSSSCCNISSGTGTPNSTSPRYTTAIQQEQQQPPSPLVVHSHLSSLINQANFSGWYIH PNEIELKEKIGEGSTAEIYKGLWRGLEVAVKCIVPHFFNESTGVTFFAQELDTLSRQRHRFILQFFGASLDPPNHAWVVTESLETTLKEWLHGPGSRKKE RSFPLPPFLERLARAVEISQAMQYLHQQKPNKVIHRDLKPSNIFLDDANHVRVADFGHARFLEDTQMALTGETGTYVYMAPEVISCQPYNEKCDVYSFAV ILNEIITGNYPYVDTDFGPTKIAMQVADGSLRPALPADEDGQLAELIDLICVSWDQDPSLRPSFATITSALKEIQSTVESHIPQS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35780		STY17	serine/threonine/tyrosine kina...		Lus10026461 [exp]	0	1
AT1G09310			Protein of unknown function, D...		Lus10010904 [exp]	1.7	0.9307
AT2G36970			UDP-Glycosyltransferase superf...		Lus10016128 [exp]	2.0	0.9294
AT1G68260			Thioesterase superfamily prote...		Lus10031948 [exp]	5.5	0.9240
AT2G26250		KCS10, FDH	FIDDLEHEAD, 3-ketoacyl-CoA syn...		Lus10009799 [exp]	7.1	0.9273
AT3G21690			MATE efflux family protein (.1...		Lus10027168 [exp]	9.2	0.9194
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10015906 [exp]	9.5	0.8738
AT1G09310			Protein of unknown function, D...		Lus10031428 [exp]	9.8	0.9251
AT5G54010			UDP-Glycosyltransferase superf...		Lus10013337 [exp]	9.9	0.9147
AT5G12920			Transducin/WD40 repeat-like su...		Lus10031253 [exp]	11.0	0.9155
					Lus10031949 [exp]	11.1	0.8531

Compare expression of checked genes

Lus10026461 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.