Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13980 89 / 2e-19 unknown protein AT1G54200 88 / 5e-19 unknown protein AT3G42800 59 / 2e-09 unknown protein AT5G12050 47 / 1e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025011 [exp] 620 / 0 AT3G13980 115 / 1e-28 unknown protein Lus10037659 [exp] 97 / 6e-22 AT3G13980 193 / 9e-59 unknown protein Lus10008457 [exp] 90 / 1e-19 AT3G13980 151 / 1e-42 unknown protein Lus10015641 [exp] 84 / 7e-18 AT3G13980 176 / 3e-52 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G222700 [exp] 204 / 3e-61 AT1G54200 114 / 4e-28 unknown protein Potri.018G049900 [exp] 190 / 1e-55 AT1G54200 122 / 5e-31 unknown protein Potri.003G063400 [exp] 139 / 1e-36 AT1G54200 173 / 7e-50 unknown protein Potri.001G170500 [exp] 138 / 3e-36 AT1G54200 167 / 2e-47 unknown protein Potri.018G065000 [exp] 113 / 1e-27 AT3G42800 139 / 1e-37 unknown protein Potri.006G144700 [exp] 110 / 1e-26 AT3G13980 130 / 2e-34 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026463 pacid=23176430 polypeptide=Lus10026463 locus=Lus10026463.g ID=Lus10026463.BGIv1.0 annot-version=v1.0 ATGTATAAGTTGGAGAAACCACGCAATAAGGAAGAGAGATTCAGGGCAGACTACTCCAACAACAACCCATCTTTCTCTTCCACACTTCTCGACGAAATCT ACCGCTCAATCGATGTGGGTAGCGCCAAAAGCCCTGGTCACTTGAAATTCTACAGAGACAACAAAACCAAGAAGCACGCAGCTGAAAAACCACCAATGCT CAGCCGTACTCGATGCAATGCCGTCGCACATATCAATATGGATGATCAGAAACAGCGCCGCCGACATGACTTCGTTGAGTTCGAGAGAAAATTCCTGCTT CTACAGCAGCAGAGGAAACATGATCCTGATTTTGATCAGGATCTTCTCTTCTTCAGCTCCACTTCTAATTCCTCCGACTCCAGCTCCGGCGGCTTCTCTT CCTCCGATACAGATTCCATCTACGCTTCCAGATCCACTTGCTCCTCTCTGCCGCCGCCCACCATGCCTAAGCCGGTCAAGACTTCCGCGGAAAGCAGAGC AAGGGCTCGGTTTTACGACCACTCTTATGGTAAAGATGAGGGGATGAGCGACACTGTGAGTAAGTCCAAATTACGGGCACTAAAGATTTACAGCAAGGTG AAACAACCGATTTCTCCCGGAGGGAAGATTTCCAATTTTATCAATTCTCTGTTCACGGCTGGGACACCCAAGAAGAAAAAATCAAAGGATCTGAGTCAAG CGTCGAGTTGCTCGTCGGCCTCTTCGCTCTCGAGGTCTTGCCTGAGTAAGAACTCGCCGACGACAAGGGAGAAGCTCCGCAATGGGGAGAAGAGGACTGT CCGGTTTTACCCAGTGAGTGTCATCGTTGACGAAGATAACCGACCCTGCGGCCAGAAACGCCTGATCTCCCAGGAACAACAGTGGTCTGTTCAATCAACA ACAAAAACTCCTTCCTCTGTTGGCGGGGAATGGGATAGTGATATGATGAAGCGGAGAGTAATGGAGAAGAAGAGCCATAAGGTGGAGGAAATAGCCATCA GAGATTTTCGGAAGGAATACCATGGAATTGAGATGAAGCAACATGTCAATTTCGAGGAACAAGGAATGGAGGATGACGTCAGCTGCTCTAGCTCGGATTT GTTCGAGCTGGATCACAATGCAGTAATTGAAAGGGACGATGTTATTTTCAGTAGCAGTGAGGAGCTTCCTGTGTTTGAAACTACTAGTTTTCATTCTATT CGTCACATTGCTAATCGCGCACTTACTATAATGTAG
AA sequence Show only first row Show all	>Lus10026463 pacid=23176430 polypeptide=Lus10026463 locus=Lus10026463.g ID=Lus10026463.BGIv1.0 annot-version=v1.0 MYKLEKPRNKEERFRADYSNNNPSFSSTLLDEIYRSIDVGSAKSPGHLKFYRDNKTKKHAAEKPPMLSRTRCNAVAHINMDDQKQRRRHDFVEFERKFLL LQQQRKHDPDFDQDLLFFSSTSNSSDSSSGGFSSSDTDSIYASRSTCSSLPPPTMPKPVKTSAESRARARFYDHSYGKDEGMSDTVSKSKLRALKIYSKV KQPISPGGKISNFINSLFTAGTPKKKKSKDLSQASSCSSASSLSRSCLSKNSPTTREKLRNGEKRTVRFYPVSVIVDEDNRPCGQKRLISQEQQWSVQST TKTPSSVGGEWDSDMMKRRVMEKKSHKVEEIAIRDFRKEYHGIEMKQHVNFEEQGMEDDVSCSSSDLFELDHNAVIERDDVIFSSSEELPVFETTSFHSI RHIANRALTIM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54200			unknown protein		Lus10026463 [exp]	0	1
AT2G41640			Glycosyltransferase family 61 ...		Lus10042044 [exp]	3.7	0.8535
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Lus10018329 [exp]	6.2	0.8024
AT1G51940			protein kinase family protein ...		Lus10037586 [exp]	6.5	0.8375
AT3G05100			S-adenosyl-L-methionine-depend...		Lus10004147 [exp]	6.7	0.8115
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10042192 [exp]	7.2	0.8335
AT5G07030			Eukaryotic aspartyl protease f...		Lus10026171 [exp]	7.7	0.8088
AT1G67750			Pectate lyase family protein (...		Lus10006456 [exp]	8.8	0.8193
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Lus10009184 [exp]	10.1	0.8255
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Lus10035976 [exp]	10.4	0.8473
AT5G62850		ATVEX1, SWEET5,...	VEGETATIVE CELL EXPRESSED1, No...		Lus10022226 [exp]	11.8	0.8016

Compare expression of checked genes

Lus10026463 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.