Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12040 460 / 1e-162 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1.2) AT4G08790 119 / 1e-30 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1) AT2G27450 67 / 3e-12 CPA, ATNLP1, NLP1 nitrilase-like protein 1 (.1.2) AT3G44310 64 / 3e-11 NITI, NIT1, ATNIT1 A. THALIANA NITRILASE 1, nitrilase 1 (.1.2.3) AT5G22300 62 / 1e-10 AtNIT4, NIT4 nitrilase 4 (.1) AT3G44300 60 / 7e-10 AtNIT2, NIT2 nitrilase 2 (.1) AT3G44320 59 / 2e-09 AtNIT3, NIT3 nitrilase 3 (.1) AT5G64370 56 / 2e-08 PYD3, BETA-UP PYRIMIDINE 3, beta-ureidopropionase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025012 [exp] 241 / 8e-79 AT5G12040 137 / 1e-39 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1.2) Lus10001975 [exp] 122 / 7e-32 AT4G08790 469 / 6e-168 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1) Lus10030303 [exp] 120 / 4e-31 AT4G08790 474 / 1e-170 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1) Lus10020627 [exp] 66 / 8e-12 AT2G27450 556 / 0.0 nitrilase-like protein 1 (.1.2) Lus10005201 [exp] 59 / 1e-09 AT5G22300 559 / 0.0 nitrilase 4 (.1) Lus10013313 [exp] 57 / 6e-09 AT5G22300 561 / 0.0 nitrilase 4 (.1) Lus10004862 [exp] 57 / 9e-09 AT2G27450 531 / 0.0 nitrilase-like protein 1 (.1.2) Lus10007065 [exp] 53 / 2e-07 AT5G64370 673 / 0.0 PYRIMIDINE 3, beta-ureidopropionase (.1) Lus10020436 [exp] 52 / 3e-07 AT5G64370 669 / 0.0 PYRIMIDINE 3, beta-ureidopropionase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G222900 [exp] 478 / 1e-169 AT5G12040 479 / 5e-170 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1.2) Potri.010G214600 [exp] 120 / 6e-31 AT4G08790 474 / 8e-170 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1) Potri.008G047100 [exp] 115 / 2e-29 AT4G08790 465 / 3e-166 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1) Potri.004G201400 [exp] 65 / 2e-11 AT2G27450 548 / 0.0 nitrilase-like protein 1 (.1.2) Potri.016G074200 [exp] 57 / 6e-09 AT5G22300 358 / 1e-121 nitrilase 4 (.1) Potri.006G207700 [exp] 57 / 7e-09 AT5G22300 369 / 2e-126 nitrilase 4 (.1) Potri.004G199600 [exp] 56 / 3e-08 AT5G22300 578 / 0.0 nitrilase 4 (.1) Potri.007G115900 [exp] 52 / 5e-07 AT5G64370 720 / 0.0 PYRIMIDINE 3, beta-ureidopropionase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00795 [flax] [poplar] CN_hydrolase Carbon-nitrogen hydrolase
Representative CDS sequence Show only first row Show all	>Lus10026464 pacid=23176427 polypeptide=Lus10026464 locus=Lus10026464.g ID=Lus10026464.BGIv1.0 annot-version=v1.0 ATGAAGTCAGCCATATCGACAGCCTTCCATTCGAGCAAGCTTCATCGCTTTCCCTTCTCTTGCTTTACGGAATTTCTCCAACCCTTGGAACACAATCGCC GAGGGAACCTTCCGAATTTGAGGCGAATTAGCACCTTGTTCACTCCAGTCATGGCTGCCTCTTTTAAGCCTGAGCAAGCTAGGGCACCGCCGGCCCTTCC CTTGCCCAATTCCTTCTTCTTCTTCTCCATCATCATCATCGTCTTCTTCTTCTTCCGGCAGTTCAACATAGGGCTGTGCCAGTTGGCAGTGACGGCAGAT AAGCAGCTTAATATTGAGCATGCCCGGAAAGCGATTGAAGAAGCTGCCGGAAAGGGTGCTAAACTTGTTGTCTTGCCTGAAATATGGAATAGTCCATATT CGAATGCTAGTTTCCCTCTGTACGCCGAGGACATCGACGCCGGTGGTGATGCTTCTCCTTCAACGGCAATGCTCTCTGAAGTTGCTAAGAGGCTGAATGT CTCCATAGTTGGTGGCTCCATACCTGAACGGTCAGGTGATAGGCTGTATAACACTTGCTGTGTCTTTGATGCTCACGGGAAGTTATTGGCAAAGCACAGG AAGATTCATCTATTCGATATTGATATTCCTGGGAAGATAACGTTCATTGAATCAGAGACTTTAACAGCTGGGGACACTCCAACAATCGTGGATACAGAAG TTGGACGTATTGGTATAGGTATCTGTTATGACATTCGGTTTCAGGAACTGGCAGTGATATATGCAGCTAGAGGTGCTCACTTGATATGCTACCCTGGGGC GTTTAACATGACCACTGGACCTCTACACTGGGAGTTATTGCAGAGAGCAAGGGCTGCAGACAACCAGCTGTATGTAGCCACTTGCTCACCTGCGAGAGAT GAGGGTGCTGGCTATGTGGCCTGGGGCCACTCGACTCTTGTAGGACCTTTCGGAGAAGTTGTGGCTACTACTGAGCATGAGGAGGCCATAATCATAGCAG AGATTGATTATTCCCTAATTGATCAGAGGCGGACCTTCCTGCCATTGTCCAAGCAGCGGCGAGGTGATCTTTATCAATTGGTGGATATACAAAGACTTAA CTCCGAATCTTGA
AA sequence Show only first row Show all	>Lus10026464 pacid=23176427 polypeptide=Lus10026464 locus=Lus10026464.g ID=Lus10026464.BGIv1.0 annot-version=v1.0 MKSAISTAFHSSKLHRFPFSCFTEFLQPLEHNRRGNLPNLRRISTLFTPVMAASFKPEQARAPPALPLPNSFFFFSIIIIVFFFFRQFNIGLCQLAVTAD KQLNIEHARKAIEEAAGKGAKLVVLPEIWNSPYSNASFPLYAEDIDAGGDASPSTAMLSEVAKRLNVSIVGGSIPERSGDRLYNTCCVFDAHGKLLAKHR KIHLFDIDIPGKITFIESETLTAGDTPTIVDTEVGRIGIGICYDIRFQELAVIYAARGAHLICYPGAFNMTTGPLHWELLQRARAADNQLYVATCSPARD EGAGYVAWGHSTLVGPFGEVVATTEHEEAIIIAEIDYSLIDQRRTFLPLSKQRRGDLYQLVDIQRLNSES

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12040			Nitrilase/cyanide hydratase an...		Lus10026464 [exp]	0	1
AT4G11600		LSC803, PHGPX, ...	glutathione peroxidase 6 (.1)		Lus10008499 [exp]	2.2	0.7778
AT4G35220			Cyclase family protein (.1)		Lus10014092 [exp]	10.3	0.7752
AT3G05500			Rubber elongation factor prote...		Lus10015171 [exp]	14.9	0.7438
AT5G03370			acylphosphatase family (.1)		Lus10026533 [exp]	23.4	0.7390
AT5G16550			unknown protein		Lus10003850 [exp]	25.6	0.7302
AT1G71780			unknown protein		Lus10040812 [exp]	25.9	0.7319
AT1G55910		ZIP11	zinc transporter 11 precursor ...		Lus10004413 [exp]	32.9	0.7330
AT5G21090			Leucine-rich repeat (LRR) fami...		Lus10000196 [exp]	34.9	0.7368
AT3G62580			Late embryogenesis abundant pr...		Lus10025037 [exp]	50.3	0.7121
AT3G06170			Serinc-domain containing serin...		Lus10004430 [exp]	52.4	0.7150

Compare expression of checked genes

Lus10026464 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.