Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05670 197 / 9e-55 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT5G39710 195 / 5e-54 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02060 192 / 5e-53 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G16420 174 / 2e-47 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G04760 172 / 1e-46 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G22470 172 / 2e-46 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 171 / 2e-46 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G03560 171 / 1e-45 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G53700 171 / 2e-45 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74580 167 / 4e-44 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025013 [exp] 728 / 0 AT1G05670 161 / 1e-43 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10025014 [exp] 261 / 5e-85 AT5G64320 70 / 1e-14 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013283 [exp] 189 / 4e-52 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10036129 [exp] 184 / 1e-51 AT1G13040 573 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10027916 [exp] 188 / 2e-51 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 186 / 1e-50 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 187 / 2e-50 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036238 [exp] 183 / 6e-50 AT4G20090 832 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10011646 [exp] 177 / 3e-49 AT1G13040 503 / 1e-175 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G223300 [exp] 673 / 0 AT1G05670 208 / 1e-58 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.018G050100 [exp] 228 / 3e-65 AT4G12070 133 / 6e-33 unknown protein Potri.014G056400 [exp] 201 / 4e-56 AT1G02060 885 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G105600 [exp] 197 / 6e-55 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G038400 [exp] 192 / 8e-54 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G045000 [exp] 191 / 2e-53 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046000 [exp] 186 / 6e-51 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G035700 [exp] 185 / 2e-50 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.013G034300 [exp] 178 / 8e-50 AT1G62930 397 / 4e-133 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G025600 [exp] 182 / 1e-49 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10026465 pacid=23176435 polypeptide=Lus10026465 locus=Lus10026465.g ID=Lus10026465.BGIv1.0 annot-version=v1.0 ATGGCAACTCCCTTGAGAAATCTGTCCTTCCGCGTTCATCCTTCAGAGCTCGGCCCACTGACCAGCGCCATCACTTCCTGCCTTAAAACCATAAACCCTC GAAACCTCAACTATTCGTACATTAATCCCGCCCCTCTGAACCAATTCTCGCCCTACCTAGACTACAGCTTAGTTCTTCAAGTCATCAACACCCAATCAAA CCCATACCATGCCCTCTTCTTCTTCAACTGGGCCTCAAATCCTTTACCCAACCCTAACAAGTACACTCATAATAACAAATGTTTCGTCGCCATTATCGAC CTTCTTCTATCTCACTCCCTTTTTTCCATTGCTTCTTCCCTCCTCGAAACCTCTAACAAGCTCTCAGATTTCATGATCAGCAAGTTCATCACGGCGAATG GCCATCTGGGCAATGTAAAAGCTTCCATCTTTTGGTTTCACAGAGCGAAAACCATTGCGAATGGAGATTGCTTAAACTCCTGTAATGCCATTTTGGGTGC CATGTTGAAGACCCATCGAATTGGCTTGGCTCAGTCGTTTTTCGATCAGATTGTGAGCTGTGACAGAGTGAAGCCTGATGTTTCTACTTATACCACGATG ATTAGAGGTTTTTGCAAAATGGGTATGGTTGAGAAAGCACGGAAGCTGTTTGATGAAATGCCTTGCAAGCCTAACTCGTTGACGTGTAATACATTGATTC ATGGGTACTGTAAGAAGGGAGAGATGGACTCTGCCAAGGTAATATTCTACAGGATGATTGGCGATTCAGGTTGTTCACCTGACACAGTTACTTATTCTAC TTTGATTGACGGGCATTGTAAGAAAGGCGAGTTTGATGAGGCATTGAAGTGGAAGAGTGAGATGATGAATCGGGGATTCAAACCGAATTTGCTGACCTAC AATGCTATAATCTATAATTTGTGTTTGAGAGGAAACGTTGATGAGGCCAAGAAGCTCATAATAAAAATGAGGCTGAATGGAGTCAGAGAAAATACTGCAA CTCACCTAAGCATCTTGAAAGGCCTTTCCAACGTAGGGAAGTCAGATGAAGTAGTACAGTATTTCAGGGAGCGATTCGGGAAAGAAATAAAACCGGACGG GAAAGCCCATGCTATTGTGGTGAAAGAGTACTGCAAGATGAAGAAACCGACTGCTGCGATCTCTATCTTGAAGGAAATGCATGCTAAAGGCATTAATTCG GATGTTTCAAGTTTCAACTCAGTCTTTAGAACGTTAATGGAGGTGGGAGAGCTTGGCATGGCAACGTATGTTCTAAAGCAAATGAAGAAGATGGGGTGCA ACCCAAATTTCATATCGTATCGCACAGTGATATGTAACCTTAGTAAGAGCAATGGTTGTATGAAGGAAGCGGAGAAGATTGTCAAAGATATGGTCTCAGA CGGAGTCCTTATGGACGCAAGCATTTACAGTAGTTTAATTTATGGATACTGTGAGGCAGGAGATGTCAGAATGGCAACCAAAGTTTTCGATGAAGCGATT AAGAAGGGGTACGTTGTCAGCTTAGAGGCTTTTACAGTGTTCATCAAACGGTTAATAAGTGAAAAGAAGGAAGTAATTGGTGCTGAGGATCTGTTAAAAA AGATGTGTAAGAGATGCGCTGTTGCTGATACTGCATGCTATCGGCAAGTCCTCGATGGATACATGGGAATCAGCCCCTAG
AA sequence Show only first row Show all	>Lus10026465 pacid=23176435 polypeptide=Lus10026465 locus=Lus10026465.g ID=Lus10026465.BGIv1.0 annot-version=v1.0 MATPLRNLSFRVHPSELGPLTSAITSCLKTINPRNLNYSYINPAPLNQFSPYLDYSLVLQVINTQSNPYHALFFFNWASNPLPNPNKYTHNNKCFVAIID LLLSHSLFSIASSLLETSNKLSDFMISKFITANGHLGNVKASIFWFHRAKTIANGDCLNSCNAILGAMLKTHRIGLAQSFFDQIVSCDRVKPDVSTYTTM IRGFCKMGMVEKARKLFDEMPCKPNSLTCNTLIHGYCKKGEMDSAKVIFYRMIGDSGCSPDTVTYSTLIDGHCKKGEFDEALKWKSEMMNRGFKPNLLTY NAIIYNLCLRGNVDEAKKLIIKMRLNGVRENTATHLSILKGLSNVGKSDEVVQYFRERFGKEIKPDGKAHAIVVKEYCKMKKPTAAISILKEMHAKGINS DVSSFNSVFRTLMEVGELGMATYVLKQMKKMGCNPNFISYRTVICNLSKSNGCMKEAEKIVKDMVSDGVLMDASIYSSLIYGYCEAGDVRMATKVFDEAI KKGYVVSLEAFTVFIKRLISEKKEVIGAEDLLKKMCKRCAVADTACYRQVLDGYMGISP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05670			Pentatricopeptide repeat (PPR-...		Lus10026465 [exp]	0	1
AT1G59990		RH22, EMB3108	RNA helicase 22, EMBRYO DEFECT...		Lus10029196 [exp]	6.0	0.8741
AT5G64520		ATXRCC2, XRCC2	homolog of X-ray repair cross ...		Lus10021426 [exp]	8.4	0.8085
AT2G45440		DHDPS2	dihydrodipicolinate synthase (...		Lus10009302 [exp]	8.8	0.8761
AT2G03880		REME1	required for efficiency of mit...		Lus10001617 [exp]	15.6	0.8677
AT5G27110			Tetratricopeptide repeat (TPR)...		Lus10009702 [exp]	16.2	0.8034
AT5G43790			Pentatricopeptide repeat (PPR)...		Lus10039388 [exp]	17.7	0.8630
AT2G36980			Tetratricopeptide repeat (TPR)...		Lus10033982 [exp]	19.9	0.8539
AT4G24830			arginosuccinate synthase famil...		Lus10030725 [exp]	19.9	0.8264
AT3G16610			pentatricopeptide (PPR) repeat...		Lus10035788 [exp]	21.5	0.8399
AT1G69350			Tetratricopeptide repeat (TPR)...		Lus10030415 [exp]	22.9	0.8313

Compare expression of checked genes

Lus10026465 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.