Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72820 374 / 3e-129 Mitochondrial substrate carrier family protein (.1) AT5G26200 369 / 1e-127 Mitochondrial substrate carrier family protein (.1) AT5G15640 221 / 1e-69 Mitochondrial substrate carrier family protein (.1) AT1G34065 72 / 1e-13 SAMC2 S-adenosylmethionine carrier 2 (.1) AT5G51050 66 / 8e-12 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) AT4G39460 63 / 8e-11 SAMC1, SAMT1 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) AT1G07030 60 / 7e-10 Mitochondrial substrate carrier family protein (.1) AT2G30160 60 / 8e-10 Mitochondrial substrate carrier family protein (.1) AT2G33820 59 / 2e-09 ATMBAC1 Mitochondrial substrate carrier family protein (.1) AT3G20240 57 / 6e-09 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025015 [exp] 612 / 0 AT5G26200 414 / 3e-145 Mitochondrial substrate carrier family protein (.1) Lus10026468 [exp] 584 / 0 AT5G26200 416 / 7e-146 Mitochondrial substrate carrier family protein (.1) Lus10035134 [exp] 216 / 3e-67 AT5G15640 477 / 2e-170 Mitochondrial substrate carrier family protein (.1) Lus10041498 [exp] 214 / 1e-66 AT5G15640 494 / 2e-177 Mitochondrial substrate carrier family protein (.1) Lus10012597 [exp] 212 / 1e-64 AT5G15640 488 / 9e-173 Mitochondrial substrate carrier family protein (.1) Lus10031969 [exp] 178 / 1e-53 AT5G15640 404 / 3e-143 Mitochondrial substrate carrier family protein (.1) Lus10038063 [exp] 141 / 7e-42 AT1G72820 108 / 7e-30 Mitochondrial substrate carrier family protein (.1) Lus10017849 [exp] 70 / 4e-13 AT1G74240 430 / 6e-151 Mitochondrial substrate carrier family protein (.1) Lus10026395 [exp] 66 / 8e-12 AT2G30160 483 / 5e-173 Mitochondrial substrate carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G050300 [exp] 436 / 2e-153 AT1G72820 435 / 2e-153 Mitochondrial substrate carrier family protein (.1) Potri.006G223600 [exp] 424 / 8e-149 AT1G72820 429 / 7e-151 Mitochondrial substrate carrier family protein (.1) Potri.017G098500 [exp] 221 / 1e-69 AT5G15640 460 / 3e-164 Mitochondrial substrate carrier family protein (.1) Potri.004G117000 [exp] 218 / 4e-68 AT5G15640 434 / 1e-153 Mitochondrial substrate carrier family protein (.1) Potri.008G100100 [exp] 187 / 1e-56 AT5G15640 338 / 5e-116 Mitochondrial substrate carrier family protein (.1) Potri.016G125200 [exp] 83 / 1e-17 AT1G07030 436 / 1e-154 Mitochondrial substrate carrier family protein (.1) Potri.003G127600 [exp] 76 / 1e-14 AT4G11440 437 / 3e-146 Mitochondrial substrate carrier family protein (.1) Potri.001G182000 [exp] 68 / 1e-12 AT1G79900 424 / 1e-150 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) Potri.012G110700 [exp] 66 / 1e-11 AT5G51050 714 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Potri.001G282400 [exp] 66 / 1e-11 AT1G07030 426 / 1e-150 Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10026466 pacid=23176413 polypeptide=Lus10026466 locus=Lus10026466.g ID=Lus10026466.BGIv1.0 annot-version=v1.0 ATGAGCCCAGGTGCCACCGAAGAAGATTCACGATCAGAGATTCACATCCCAGCAGATATCGACTGGCAGATGCTGGACAAATCCAGGTTCTTCTTTCTCG GGGCAGCACTCTTTTCCGGCGTCTCGGCTGCTCTCTACCCGGCCGTCGTCCTCAAGACTCGTTTACAGGTCATCCCAACTCAAATCTCATCTCTCAAACT GTCTCTCTCTATTATGAGCCACGAAGGCATTCGAGGATTCTACAGGGGTTTTGGGTTTTCTTTGATGGGAACAGTCCCAGCTCGAGCCCTTTACATGTCT GCCCTCGAGCTCACTAAGAGCAGCGTTGGGACTACTGCGCTTAATTTAGGGTTTACGGATACTTGTGCCATTGCAATTGCTAATGCTGCTGCTGGGATGA GCTCTGCCATGGCTGCACAGCTTGTTTGGACGCCGATTGATGTTGTCAGCCAGAGGCTCATGGTCCAAGGTTGCAGCGGTGGCTGCAACAACGCTGTTGC ACAATCGTGTCTTACAAATTCTTATGGTTATCTGAATGGAATTGATGCTTGTAGGAAGATTGTGTATGCTGATGGTTTGAGAGGGTTGTATAGAGGTTTT GGGATCTCAATCTTAGCATATGCACCCTCTAATGCTGTTTGGTGGTCTTCCTACTCTCTGGCACATAGATTTGTTTGGAGCTGTCTTAACTCTTCTACTT ACAAGGATAATAGAGATGATGATGATGATAGAGGTTCTGATTTCAAGTTCAATGGCCATGATTCGATAGCAATGTTAGGGGTGCAAGGGTTATGTGCAGC CATGGCAAGTGGAGCTTCAGCTGTTGTGACTATGCCTATTGACACGATTAAGACGAGGTTGCAGGTCTTTGAATGTGGGAGAAAGAAGCCATTGACTTGT GGGAGAAGGAAGCCATTGACAGTTAGAGAAACGGTAAGGAATTTGGTGAATGAAGGTGGATTTGCAGCTTGCTATAAAGGATTAGGGCCGAGGTGGGTTT GTATGTCCATGTCTTCTGCAACTATGATCACCACATATGAGTTCTTGAAGAGGCTTTCTACCAAGAGGAAAGAGACTACTTTGGATTGA
AA sequence Show only first row Show all	>Lus10026466 pacid=23176413 polypeptide=Lus10026466 locus=Lus10026466.g ID=Lus10026466.BGIv1.0 annot-version=v1.0 MSPGATEEDSRSEIHIPADIDWQMLDKSRFFFLGAALFSGVSAALYPAVVLKTRLQVIPTQISSLKLSLSIMSHEGIRGFYRGFGFSLMGTVPARALYMS ALELTKSSVGTTALNLGFTDTCAIAIANAAAGMSSAMAAQLVWTPIDVVSQRLMVQGCSGGCNNAVAQSCLTNSYGYLNGIDACRKIVYADGLRGLYRGF GISILAYAPSNAVWWSSYSLAHRFVWSCLNSSTYKDNRDDDDDRGSDFKFNGHDSIAMLGVQGLCAAMASGASAVVTMPIDTIKTRLQVFECGRKKPLTC GRRKPLTVRETVRNLVNEGGFAACYKGLGPRWVCMSMSSATMITTYEFLKRLSTKRKETTLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26200			Mitochondrial substrate carrie...		Lus10026466 [exp]	0	1
AT5G65260			RNA-binding (RRM/RBD/RNP motif...		Lus10043008 [exp]	1.0	0.7987
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Lus10042184 [exp]	3.5	0.7384
AT4G21110			G10 family protein (.1)		Lus10023881 [exp]	4.9	0.6835
AT3G15970			NUP50 (Nucleoporin 50 kDa) pro...		Lus10037931 [exp]	18.6	0.6874
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Lus10037188 [exp]	19.4	0.6545
AT1G52343			unknown protein		Lus10007686 [exp]	23.4	0.6101
AT4G00390	GeBP		DNA-binding storekeeper protei...		Lus10005506 [exp]	26.2	0.6716
AT3G15040			Protein of unknown function, D...		Lus10004207 [exp]	34.4	0.6725
AT2G19810	C3HZnF	AtOZF1	Oxidation-related Zinc Finger ...		Lus10012922 [exp]	35.1	0.6443
AT1G18850			unknown protein		Lus10023616 [exp]	36.3	0.6511

Compare expression of checked genes

Lus10026466 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.