Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72820 375 / 1e-129 Mitochondrial substrate carrier family protein (.1) AT5G26200 373 / 6e-129 Mitochondrial substrate carrier family protein (.1) AT5G15640 224 / 5e-71 Mitochondrial substrate carrier family protein (.1) AT1G34065 75 / 7e-15 SAMC2 S-adenosylmethionine carrier 2 (.1) AT5G51050 70 / 5e-13 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) AT4G39460 68 / 1e-12 SAMC1, SAMT1 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) AT2G33820 63 / 5e-11 ATMBAC1 Mitochondrial substrate carrier family protein (.1) AT2G37890 62 / 1e-10 Mitochondrial substrate carrier family protein (.1) AT4G11440 61 / 5e-10 Mitochondrial substrate carrier family protein (.1) AT1G07030 60 / 8e-10 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025015 [exp] 608 / 0 AT5G26200 414 / 3e-145 Mitochondrial substrate carrier family protein (.1) Lus10026466 [exp] 595 / 0 AT5G26200 409 / 5e-143 Mitochondrial substrate carrier family protein (.1) Lus10035134 [exp] 224 / 1e-70 AT5G15640 477 / 2e-170 Mitochondrial substrate carrier family protein (.1) Lus10041498 [exp] 223 / 2e-70 AT5G15640 494 / 2e-177 Mitochondrial substrate carrier family protein (.1) Lus10012597 [exp] 219 / 2e-67 AT5G15640 488 / 9e-173 Mitochondrial substrate carrier family protein (.1) Lus10031969 [exp] 179 / 4e-54 AT5G15640 404 / 3e-143 Mitochondrial substrate carrier family protein (.1) Lus10038063 [exp] 143 / 2e-42 AT1G72820 108 / 7e-30 Mitochondrial substrate carrier family protein (.1) Lus10017849 [exp] 72 / 1e-13 AT1G74240 430 / 6e-151 Mitochondrial substrate carrier family protein (.1) Lus10026395 [exp] 67 / 5e-12 AT2G30160 483 / 5e-173 Mitochondrial substrate carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G050300 [exp] 444 / 5e-157 AT1G72820 435 / 2e-153 Mitochondrial substrate carrier family protein (.1) Potri.006G223600 [exp] 429 / 6e-151 AT1G72820 429 / 7e-151 Mitochondrial substrate carrier family protein (.1) Potri.017G098500 [exp] 228 / 2e-72 AT5G15640 460 / 3e-164 Mitochondrial substrate carrier family protein (.1) Potri.004G117000 [exp] 227 / 7e-72 AT5G15640 434 / 1e-153 Mitochondrial substrate carrier family protein (.1) Potri.008G100100 [exp] 196 / 6e-60 AT5G15640 338 / 5e-116 Mitochondrial substrate carrier family protein (.1) Potri.016G125200 [exp] 85 / 2e-18 AT1G07030 436 / 1e-154 Mitochondrial substrate carrier family protein (.1) Potri.003G127600 [exp] 79 / 5e-16 AT4G11440 437 / 3e-146 Mitochondrial substrate carrier family protein (.1) Potri.001G182000 [exp] 72 / 4e-14 AT1G79900 424 / 1e-150 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) Potri.005G085900 [exp] 71 / 2e-13 AT4G39460 487 / 9e-175 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Potri.012G110700 [exp] 68 / 2e-12 AT5G51050 714 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10026468 pacid=23176444 polypeptide=Lus10026468 locus=Lus10026468.g ID=Lus10026468.BGIv1.0 annot-version=v1.0 ATGAGCCTACGTACAGCCGAAGAAGATTCACGAGCAGAGATTCACATCCCAACAGACATCGACTGGCAGATGCTGGACAAATCCAGGTTCTTCTTTCTCG GGGCAGCACTCTTCTCCGGCGTCTCGGCCGCTCTCTACCCGGCCGTCGTCCTCAAGACTCGTTTACAGGTCATCCCAACTCAAATCTCATCTCTCAAACT ATCTCTCTCTATTATGAGCCACGAAGGCATTCGAGGATTCTACAGGGGTTTTGGGTTTTCTTTGATGGGAACAGTCCCAGCTCGAGCCCTTTACATGTCT GCCCTCGAGCTCACTAAGAGCAGCGTTGGGACTACTGCGCTTAATTTAGGGTTTACGGATACTTGTGCCATTGCAATTTCTAATGCTGCTGCTGGGATGA GCTCTGCCATGGCTGCACAGCTTGTTTGGACGCCGATTGATGTTGTCAGCCAGAGGCTCATGGTCCAAGGTTGCAGCGGCGGCGGCAAGAACGTTGTTGC ACAATCGTGTCTTACAAATTCTTATGGTTATCTGAATGGAATTGATGCTTGTAGGAAGATTGTGTATGCTGATGGTTTGAGAGGGTTGTATAGAGGTTTT GGGATCTCAATCTTGGCATATGCACCGTCTAATGCTGTTTGGTGGTCTTCTTATTCTCTGGCACATAGATTTGTTTGGAGCTGTCTTAACTCTTCTACTT ACAAAGATAACAGAGATGATGATGATGATAGAGGAGGTTCTGATTTCAAGTTCAATGGCCATAATTCGATGGCAATGTTGGGGGTGCAAGGGTTATGTGC AGCCATGGCTAGTGGAGCTTCAGCTGTTGTAACTATGCCTATTGATACGATTAAGACGCGGTTGCAGGTCCTTGAATGTGGGGGAAGGAAGCCATTGACA GTTAGAGAAACAGTAAGGAATTTGGTGAATGAAGGTGGATTTGCAGCTTGCTATAAAGGATTAGGACCGAGGTGGGTCTCTATGTCCATGTCTGCTGCAA CTATGATCACCACATATGAGTTCTTGAAGAGGCTTTCTACCAAGAGGAAAACCACTAGTTTGGATTGA
AA sequence Show only first row Show all	>Lus10026468 pacid=23176444 polypeptide=Lus10026468 locus=Lus10026468.g ID=Lus10026468.BGIv1.0 annot-version=v1.0 MSLRTAEEDSRAEIHIPTDIDWQMLDKSRFFFLGAALFSGVSAALYPAVVLKTRLQVIPTQISSLKLSLSIMSHEGIRGFYRGFGFSLMGTVPARALYMS ALELTKSSVGTTALNLGFTDTCAIAISNAAAGMSSAMAAQLVWTPIDVVSQRLMVQGCSGGGKNVVAQSCLTNSYGYLNGIDACRKIVYADGLRGLYRGF GISILAYAPSNAVWWSSYSLAHRFVWSCLNSSTYKDNRDDDDDRGGSDFKFNGHNSMAMLGVQGLCAAMASGASAVVTMPIDTIKTRLQVLECGGRKPLT VRETVRNLVNEGGFAACYKGLGPRWVSMSMSAATMITTYEFLKRLSTKRKTTSLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26200			Mitochondrial substrate carrie...		Lus10026468 [exp]	0	1
AT5G39890			Protein of unknown function (D...		Lus10013620 [exp]	5.5	0.9144
AT4G32060			calcium-binding EF hand family...		Lus10041027 [exp]	9.5	0.8953
AT5G44730			Haloacid dehalogenase-like hyd...		Lus10015451 [exp]	10.5	0.9084
AT5G08570			Pyruvate kinase family protein...		Lus10041003 [exp]	14.3	0.9083
AT3G10040	Trihelix		sequence-specific DNA binding ...		Lus10008643 [exp]	18.3	0.8933
AT3G27220			Galactose oxidase/kelch repeat...		Lus10032070 [exp]	19.4	0.8751
AT5G39890			Protein of unknown function (D...		Lus10015360 [exp]	21.9	0.8968
AT4G10270			Wound-responsive family protei...		Lus10039752 [exp]	22.0	0.8836
AT4G10265			Wound-responsive family protei...		Lus10039751 [exp]	24.9	0.8956
AT4G10265			Wound-responsive family protei...		Lus10039755 [exp]	33.5	0.8857

Compare expression of checked genes

Lus10026468 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.