Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29310 138 / 2e-35 calmodulin-binding protein-related (.1) AT5G62390 68 / 4e-12 ATBAG7 BCL-2-associated athanogene 7 (.1) AT2G46240 57 / 2e-08 ATBAG6, BAG6 ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 6, BCL-2-associated athanogene 6 (.1) AT1G12060 50 / 9e-07 ATBAG5 BCL-2-associated athanogene 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038064 [exp] 696 / 0 AT3G29310 139 / 7e-36 calmodulin-binding protein-related (.1) Lus10031724 [exp] 69 / 2e-12 AT5G62390 334 / 1e-111 BCL-2-associated athanogene 7 (.1) Lus10031147 [exp] 69 / 2e-12 AT5G62390 331 / 3e-110 BCL-2-associated athanogene 7 (.1) Lus10012648 [exp] 65 / 1e-10 AT2G46240 157 / 1e-38 ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 6, BCL-2-associated athanogene 6 (.1) Lus10010133 [exp] 59 / 8e-09 AT2G46240 67 / 5e-12 ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 6, BCL-2-associated athanogene 6 (.1) Lus10010486 [exp] 49 / 2e-06 AT1G12060 201 / 6e-65 BCL-2-associated athanogene 5 (.1) Lus10003798 [exp] 47 / 3e-05 AT1G12050 667 / 0.0 fumarylacetoacetase, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G091100 [exp] 232 / 4e-71 AT3G29310 141 / 2e-36 calmodulin-binding protein-related (.1) Potri.012G126000 [exp] 68 / 4e-12 AT5G62390 108 / 7e-26 BCL-2-associated athanogene 7 (.1) Potri.015G126800 [exp] 66 / 2e-11 AT5G62390 311 / 1e-102 BCL-2-associated athanogene 7 (.1) Potri.002G166300 [exp] 62 / 4e-10 AT2G46240 140 / 2e-33 ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 6, BCL-2-associated athanogene 6 (.1) Potri.004G124301 [exp] 57 / 7e-10 AT3G29310 45 / 3e-06 calmodulin-binding protein-related (.1) Potri.016G014900 [exp] 46 / 2e-05 AT1G12060 159 / 6e-49 BCL-2-associated athanogene 5 (.1) Potri.003G167500 [exp] 45 / 6e-05 AT1G12060 88 / 1e-19 BCL-2-associated athanogene 5 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026469 pacid=23176433 polypeptide=Lus10026469 locus=Lus10026469.g ID=Lus10026469.BGIv1.0 annot-version=v1.0 ATGTCAAATCGAATGGCCACTCACAGTCACCACCACATTCGACATTGTCCAAACCCCGTCTCCACCATCCAAGCTTCTTCCTGCATTTCTGGTGGCTGCT GCTGCTGCCTGAAGAACTCCTCTCCGCACTCAGTTAGGCAATCAGCAGTTGACCCATATCTCGTCCGGTCCATTACAGATCTCCTCTACCAACAACCGTA CAATCAGCAGCACCAATGTTTTGATTCGTGTTGTTCCCGAGGTAGCAGAGTTTGTAGTCTTAATGATCGCATCCAGCATCCTCAATTTCAATCTCGAACC CTGCAATCTCATGTGTTGCCTCACAACGAGCCAACCCAGTTCCTTGTCTCATCCCTGCTTCAAAGACTTGATGCTTTGGAGTCCTCTTTGCGCCAGGTAT CTTCCACTTCTGTGGATGAGTACCCACTCAGAAGTGCTGCTGCCCGGGTGATTCAAGCCCATTTTCGTGCCTTTCTTGTTCGTAGATCAAGAGACCTGAG ACAACTCAAAGTCCTAGCATCTCTCAAATCTGCTTTCAACTCTCTCAGGTCTTCCATTTCAGGGAAGACTAGTTTCAATTTTGAGCTTGTCTCTGAAAAA GCCATGGACTTGCTGCTCAAGGTTGATTCTATTCAGGGTGGTGATCCCATGATCAGAGATGCAAAAAGGTTAATGAGCAACGATCTGGTGAGCTTTCTTG AACTTGTTGATGGATTTGTATCTAGGAAGAGGGCAAATGTATATAAATCAACTCGAAAGATAGGGCAAGTTGGCTGTGGGAAAAAACCTAGTGCTTGGAA TGTGAGTAATGGCTATGGAGATGCAGGTAAGAATAAAAAGGAAATAGTAGAGAAGTTGAGGCATAGGGTCAATAAGATCAATGATGGGTTGTCTAGGATT AGTGGTAATGGTGAGGAAGATGTGGCGATCAAAGGGTATCAGTACGAGTTGATTGGTGAGGATGATGTAATAGAGGAAGAAGAGGGTAACAAGGTAATTG GTAACCCCCAAAACAGTGGTGGGGTTCAACCTCCCAAAGTAAAGAAAAGCGTGAGCTTTGCTGATGATGAGGATGTTTATAAGGTTTTTGTCAAATCCAC TACAAAAGGTGCTACTTCCGGTTCTGCTAAAGATGATCGTGTTATCATAGAAGATTGTTCTGATGATGATGATGATACCTCTGTGCTTGCGGCTGATGAT GAAAAAGAAGAGGTTCAGGCCAGTGATGGGAGGTTCGTCCCGTGGAACCATGTGAATAGTGTGAAACATAGTGTTGGTTGGCAAGAAGCAGATGGAAGTT TTGTGTTCTCTGCTCCAATTCCTGCCAAGATGGAGTCGAGGGCGGATGCTGACATATGA
AA sequence Show only first row Show all	>Lus10026469 pacid=23176433 polypeptide=Lus10026469 locus=Lus10026469.g ID=Lus10026469.BGIv1.0 annot-version=v1.0 MSNRMATHSHHHIRHCPNPVSTIQASSCISGGCCCCLKNSSPHSVRQSAVDPYLVRSITDLLYQQPYNQQHQCFDSCCSRGSRVCSLNDRIQHPQFQSRT LQSHVLPHNEPTQFLVSSLLQRLDALESSLRQVSSTSVDEYPLRSAAARVIQAHFRAFLVRRSRDLRQLKVLASLKSAFNSLRSSISGKTSFNFELVSEK AMDLLLKVDSIQGGDPMIRDAKRLMSNDLVSFLELVDGFVSRKRANVYKSTRKIGQVGCGKKPSAWNVSNGYGDAGKNKKEIVEKLRHRVNKINDGLSRI SGNGEEDVAIKGYQYELIGEDDVIEEEEGNKVIGNPQNSGGVQPPKVKKSVSFADDEDVYKVFVKSTTKGATSGSAKDDRVIIEDCSDDDDDTSVLAADD EKEEVQASDGRFVPWNHVNSVKHSVGWQEADGSFVFSAPIPAKMESRADADI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29310			calmodulin-binding protein-rel...		Lus10026469 [exp]	0	1
AT1G03360		ATRRP4	ribosomal RNA processing 4 (.1...		Lus10008171 [exp]	2.6	0.7984
AT4G23060		IQD22	IQ-domain 22 (.1)		Lus10017841 [exp]	12.0	0.7362
AT5G08180			Ribosomal protein L7Ae/L30e/S1...		Lus10010993 [exp]	14.0	0.7599
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10004455 [exp]	18.8	0.7661
AT1G09590			Translation protein SH3-like f...		Lus10021079 [exp]	24.6	0.7482
AT1G50660			unknown protein		Lus10043111 [exp]	31.0	0.7351
AT2G26470			unknown protein		Lus10038230 [exp]	32.1	0.7317
AT2G30260		U2B''	U2 small nuclear ribonucleopro...		Lus10026413 [exp]	38.0	0.7177
AT1G71150			unknown protein		Lus10021799 [exp]	38.2	0.6606
AT1G14620		XTR2, EXGT-A2, ...	decoy (.1.2)		Lus10012875 [exp]	39.7	0.7292

Compare expression of checked genes

Lus10026469 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.