Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G21482 629 / 0 ATCKX5, CKX7 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) AT2G41510 426 / 8e-144 ATCKX1, CKX1 cytokinin oxidase/dehydrogenase 1 (.1) AT3G63440 411 / 2e-138 ATCKX6, CKX6, ATCKX7 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) AT1G75450 401 / 2e-134 ATCKX6, ATCKX5, CKX5 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) AT5G56970 362 / 2e-119 ATCKX3, CKX3 cytokinin oxidase 3 (.1) AT2G19500 351 / 2e-115 ATCKX2, CKX2 cytokinin oxidase 2 (.1) AT4G29740 339 / 2e-110 ATCKX4, CKX4 cytokinin oxidase 4 (.1.2) AT5G06580 43 / 0.0006 FAD-linked oxidases family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038065 [exp] 444 / 7e-156 AT5G21482 285 / 5e-94 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) Lus10038066 [exp] 409 / 5e-142 AT5G21482 259 / 4e-84 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) Lus10024289 [exp] 412 / 1e-138 AT1G75450 717 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Lus10031188 [exp] 330 / 3e-107 AT5G56970 484 / 1e-167 cytokinin oxidase 3 (.1) Lus10031200 [exp] 320 / 3e-103 AT2G19500 464 / 1e-159 cytokinin oxidase 2 (.1) Lus10003845 [exp] 312 / 1e-101 AT1G75450 578 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Lus10039574 [exp] 268 / 1e-83 AT3G63440 544 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Lus10005317 [exp] 265 / 3e-83 AT3G63440 536 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Lus10018039 [exp] 257 / 9e-81 AT2G41510 435 / 5e-150 cytokinin oxidase/dehydrogenase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G221000 [exp] 685 / 0 AT5G21482 674 / 0.0 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) Potri.003G203600 [exp] 429 / 9e-146 AT3G63440 799 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Potri.001G020900 [exp] 424 / 2e-143 AT3G63440 800 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Potri.002G030500 [exp] 416 / 3e-140 AT1G75450 785 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Potri.005G232300 [exp] 414 / 1e-139 AT1G75450 802 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Potri.006G047900 [exp] 414 / 1e-139 AT2G41510 772 / 0.0 cytokinin oxidase/dehydrogenase 1 (.1) Potri.016G044100 [exp] 410 / 6e-138 AT2G41510 752 / 0.0 cytokinin oxidase/dehydrogenase 1 (.1) Potri.006G152500 [exp] 372 / 2e-123 AT5G56970 603 / 0.0 cytokinin oxidase 3 (.1) Potri.007G066100 [exp] 309 / 1e-98 AT5G56970 500 / 3e-173 cytokinin oxidase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [flax] [poplar] FAD_PCMH PF01565 [flax] [poplar] FAD_binding_4 FAD binding domain CL0277 [flax] [poplar] FAD-oxidase_C PF09265 [flax] [poplar] Cytokin-bind Cytokinin dehydrogenase 1, FAD and cytokinin binding
Representative CDS sequence Show only first row Show all	>Lus10026471 pacid=23176426 polypeptide=Lus10026471 locus=Lus10026471.g ID=Lus10026471.BGIv1.0 annot-version=v1.0 ATGATGATAGCGTATTTGGAATTGGAAAGGTTCAATATCCAAGAAAACGACTCTTCGGAATCCCGACCTGACGACGACGACCACCACGTCGATAAGAATC AGCTCCTCCCGGTGATTGGCCTCCTCCAATCTCTTGACCTTCAAGGCTCAATCGACTACTCAACGTTAGCCGCCGGCAAGGACTTCGGTGGCGTGTACTC TTCCAACCCTCTGGCCTTAATCCGTCCTTCCGGCGCCGATGACGTAGCTCGAGTGCTGAAATCCGCCTGCCGCTCCTCCAACCTAACTGTGGCAGCAAGA GGCAACGGCCACTCCATTAACGGTCAGGCGATGGCCGATGGCGGAATCGTTCTGGACATGCGGTCTACGGAGGGTAACCACTTCAAGATCCTCCGTATTA ACGGGGGGGACCATTACGCTGACGTGTCGGGTGGGGCATTATGGGAAGATATCCTCATGCGGTGCGTTTCAGAGTACGGGTTGGCCCCGCGTTCTTGGAC CGATTACCTCAGGCTAACAGTTGGCGGCACGCTCTCCAACGCCGGAGTCAGTGGCCAAGCTTTCCGTTACGGCCCCCAGTCTTCCAACGTGACAGAGTTG GACGTCGTTACTGGGAAAGGCGACTTCTTGACTTGCTCTCCGACCCAAAACTCGGATCTTTTCTTCGGGGCGCTCGGCGGGTTGGGTCAGTTCGGCGTCA TCACCCGAGCTAGGATTCCCCTGGAGCCTGCTCCAGATATGGTAAGGTGGATAAGGATGGTGTACGCCGAGTTTGAAGACTTCAGTCGGGACGCAGAGTG GCTGGTGACGCAGCCAGAAAAGGAATCGTTTGATTACGTAGAAGGGTTCGCTTTCGTCAACAGTGATAGCCCCGCTGATGGTTGGCCTTCCGTGCCACTG AACCATATGATGACGACTCCAATTCACAGTGGTCACCAACTTCTTTACTGCCTCGAACTCGCTCTGCACTTCAATCACTCCAATTCTTCATCTACAGTTG ACTCGGTGGTGAAGAGACTGATTGGAGGGCTAAGGTACATGAAGGGGTTCAAGTATGAGGTTGATTTGAGCTACGTGGAGTTTGTGATGAGGGTGAAAAG AGTAGAAGAAGATGCTCGAGCCCATGGGATGTGGGATGCTCCCCACCCTTGGCTTAATCTCTTCGTTTCCAAAGCAGACATCGCTGAATTTGATCGCCTC ATCTTCAAAGGATTATTACACGATGGCGTGGGTGGGCCCATGCTCGTCTATCCTCTCCTCCGCTCCAAGTGGGATAGCAGGAGCTCGGTGGTATTACCAG AGGGGGAAGACGAGATTTTCTACATAGTAGCATTGTTACGGTCCAATCCTCCGTATCCAAAGGGGCCATCGGTGGATAAGTTGGTGTCACAAAATGACAA GATAATTCAATCTTGCATTCAACATGGGCTTGGTTTTAAGCTCTACCTTCCTCACTATCAATCCCAACATGACTGGAGACGACACTTTGGTGATCAATGG TCCAAATTTGTCCAACTCAAGCTAGCTTTTGATCCTATGGCCGTCCTTGCACCTGGTCAGAAAATCTTTACGAGGACGACCAAAAATAGTAATATGCTTC ATTTGTCCCCACAATAA
AA sequence Show only first row Show all	>Lus10026471 pacid=23176426 polypeptide=Lus10026471 locus=Lus10026471.g ID=Lus10026471.BGIv1.0 annot-version=v1.0 MMIAYLELERFNIQENDSSESRPDDDDHHVDKNQLLPVIGLLQSLDLQGSIDYSTLAAGKDFGGVYSSNPLALIRPSGADDVARVLKSACRSSNLTVAAR GNGHSINGQAMADGGIVLDMRSTEGNHFKILRINGGDHYADVSGGALWEDILMRCVSEYGLAPRSWTDYLRLTVGGTLSNAGVSGQAFRYGPQSSNVTEL DVVTGKGDFLTCSPTQNSDLFFGALGGLGQFGVITRARIPLEPAPDMVRWIRMVYAEFEDFSRDAEWLVTQPEKESFDYVEGFAFVNSDSPADGWPSVPL NHMMTTPIHSGHQLLYCLELALHFNHSNSSSTVDSVVKRLIGGLRYMKGFKYEVDLSYVEFVMRVKRVEEDARAHGMWDAPHPWLNLFVSKADIAEFDRL IFKGLLHDGVGGPMLVYPLLRSKWDSRSSVVLPEGEDEIFYIVALLRSNPPYPKGPSVDKLVSQNDKIIQSCIQHGLGFKLYLPHYQSQHDWRRHFGDQW SKFVQLKLAFDPMAVLAPGQKIFTRTTKNSNMLHLSPQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G21482		ATCKX5, CKX7	ARABIDOPSIS THALIANA CYTOKININ...		Lus10026471 [exp]	0	1
AT5G21482		ATCKX5, CKX7	ARABIDOPSIS THALIANA CYTOKININ...		Lus10038065 [exp]	1.0	0.9494
AT2G45720			ARM repeat superfamily protein...		Lus10041369 [exp]	2.2	0.9304
AT5G01090			Concanavalin A-like lectin fam...		Lus10035542 [exp]	2.4	0.9285
AT2G37080		RIP3	ROP interactive partner 3 (.1)		Lus10019912 [exp]	10.6	0.9209
AT3G16920		ATCTL2	chitinase-like protein 2 (.1)		Lus10037737 [exp]	13.9	0.9368
AT4G39410	WRKY	ATWRKY13, WRKY1...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10012678 [exp]	16.2	0.9331
AT2G47010			unknown protein		Lus10007453 [exp]	18.9	0.9311
AT4G13010			Oxidoreductase, zinc-binding d...		Lus10038206 [exp]	21.0	0.8948
AT3G59310			Eukaryotic protein of unknown ...		Lus10026744 [exp]	22.3	0.9212
AT1G68585			unknown protein		Lus10021686 [exp]	29.3	0.9182

Compare expression of checked genes

Lus10026471 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.