Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33210 1159 / 0 SLOMO SLOW MOTION, F-box family protein (.1) AT4G15475 74 / 3e-13 F-box/RNI-like superfamily protein (.1) AT5G25350 69 / 8e-12 EBF2 EIN3-binding F box protein 2 (.1) AT1G77000 66 / 4e-11 ATSKP2;2, SKP2B ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) AT2G25490 67 / 6e-11 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT1G21410 64 / 2e-10 SKP2A F-box/RNI-like superfamily protein (.1) AT5G01720 61 / 3e-09 RNI-like superfamily protein (.1) AT4G30640 51 / 3e-06 RNI-like superfamily protein (.1) AT5G23340 49 / 1e-05 RNI-like superfamily protein (.1) AT3G58530 47 / 4e-05 RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038067 [exp] 1776 / 0 AT4G33210 1215 / 0.0 SLOW MOTION, F-box family protein (.1) Lus10012764 [exp] 84 / 3e-16 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10028645 [exp] 68 / 1e-11 AT1G21410 520 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10002165 [exp] 67 / 8e-11 AT2G25490 684 / 0.0 EIN3-binding F box protein 1 (.1) Lus10002913 [exp] 61 / 4e-09 AT2G25490 760 / 0.0 EIN3-binding F box protein 1 (.1) Lus10013444 [exp] 59 / 9e-09 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1) Lus10018942 [exp] 59 / 1e-08 AT1G21410 513 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10034013 [exp] 59 / 2e-08 AT2G20790 808 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10041648 [exp] 58 / 3e-08 AT1G80630 478 / 2e-163 RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G220900 [exp] 1327 / 0 AT4G33210 1183 / 0.0 SLOW MOTION, F-box family protein (.1) Potri.018G048700 [exp] 1321 / 0 AT4G33210 1204 / 0.0 SLOW MOTION, F-box family protein (.1) Potri.005G185700 [exp] 69 / 4e-12 AT1G77000 523 / 0.0 ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) Potri.006G254100 [exp] 69 / 9e-12 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1) Potri.013G013100 [exp] 69 / 1e-11 AT5G27920 631 / 0.0 F-box family protein (.1) Potri.018G027700 [exp] 67 / 4e-11 AT2G25490 820 / 0.0 EIN3-binding F box protein 1 (.1) Potri.002G074700 [exp] 63 / 5e-10 AT1G21410 518 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.006G105400 [exp] 63 / 8e-10 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.016G128400 [exp] 61 / 5e-09 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.006G068500 [exp] 60 / 8e-09 AT2G25490 679 / 0.0 EIN3-binding F box protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10026472 pacid=23176432 polypeptide=Lus10026472 locus=Lus10026472.g ID=Lus10026472.BGIv1.0 annot-version=v1.0 ATGAAGATTTGGCGCTGCTTGTGCTTCATTTTCGACGACGACGAAGAAGTACAGCTGCTTGATAGCAAGAATATTAATTGTGGAGCTATGATTGAGCCCG CTCTCGAAGATGAGGCTAATTCAATCACCATGGAGGACGCTGAGGAATCTGCTCTGCCATTCTGCAACGTGAATCAGGAGAATGATAATCGGCTGTTTGA GGAGATGATCAGAGCAGCGCAGGGCCGGGATGCTGCCGGGGCCGATGCCGATGGCGTTGCTGTTCCTGTTGCCTTGAGGAGGAGCACTCTTCGCTTTGCG CAGAGGCTGCGGGGTGAGAGTAGTAATTCGTCGATGACTGAGCTGCCTGACGATGGTATTGAGGATTCTGATAGGGATTTGCATAACAAACGCGCTAAAG TTTTCACTGCTTCGCGTGACTGCGATTATGCCACAATGATGCCTTCATCCGGCCATGCTAGTTCTTCAGGACCCAAGGACACAAACTTTTCTCAGACTCC TGATAGGGGTGAGATCGTTTATCACAATTTCATGTGGAATGACAACAGTGATGAAGGTTGCTTTGGCTCCAATGGCAAAGGAGGTGATGGAAATGGAGAT GAGACTGCCCCTGACTTGGAAGTTAGAATGGATCTTTCAGATGATCTTTTGCATATGGTCTTTTCTTTCATGGATCATGTTGATCTTTGTCGAGCTGCAA TGGTTTGTAAACAGTGGCGAATAGCTAGCGCACATGAAGAGTTTTGGAGATGCTTGAATTTTGAGAATCGTAATGTATCTGTAGAACAATTTGAGGACAT GTGTCGTCGTTACCCAAATGCAACGGAGGTGAATCTTCATGGCGCTCCTTCCATCCACTATCTTGTCATGAAAGCAGTTTCGTCATTAAGAAATCTTGAG ACTTTGGCTTTAGGAAGAGGGCAGCTGGGGGATTCTTTTTTTCATGCTTTGGCAGATTGCAACATGTTGAGAAGTTTGAATGTCAACGATGCTACCCTGG GTAATGGTATGCAGGAGATATCTATAAGCCATGATAGACTGCAACATCTTCAGCTCATTAAGTGTCGTGTCCTGAGGATATCTGTTAGGTGTCCTGAGCT TCAAACTTTGTCGCTGAAGCGTAGTAATATGGGGCAAGCTGTACTCAATTGTCCTCTTCTACGTGTCCTTGATCTTGGGTCCTGTCACAAGCTTTCAGAT GCAGCAATCCGCTCAGCTGCAATTTCATGCCCACAACTGGAGTCTTTAGACATGTCAAATTGTTCTTGTGTTAGTGATGAGACATTACGTGAGATAGCCA CAACTTGTGCTAATCTTCATATTCTGGATGCTTCGTACTGCCCAAACATATCATTAGAGTCTGTAAGGCTCCCAATGTTGACTGAACTCAGGCTTCACAG CTGCGAGGGTATCACTTCAGCTTCAATGTCAGCAATATCTCTAAGTTCTATGCTGGAGGTTCTGGAGCTTAATAATTGCAACCTATTGACCTCTGTTTCA CTGGATCTTCCTCGTTTGCGGAACATAAGCTTAGTACATTGTCGCAAATTTGTCGACCTGAGCCTAAGAAGCGCAACACTATCTTCTATTGTGGTGTCGA ATTGTCCATCGCTCCATCGCATTAGCATAACTTCCAATTCTCTGAAAAAACTGGCTTTGCTGAGACAAGAAAACCTTACTACTTTGGTTTTAGAATGCCA ATGCCTGCAAGAAGTTGACCTCACTGATTGTGAATCATTAACCAATTCAATTTGTGAGGTATTTAGTGATGGTGGTGGGTGCCCAATGCTAAGGTCATTG ATTCTGGATAATTGTGAGAGTTTGACAGCAGTAAGATTCTGCAGCACGTCCTTGCTCAGTCTCTCTCTAGTTGGTTGCCGTGCTCTCACTTTTCTTGATC TGACAACCCCTTTTCTGGAGAAAGTATGTTTAGATGGTTGTGATCATCTGGAGAACGCATCCTTTTGGCCTGTTTCCCTTAGGTCTCTGAACTTGGGAAT ATGTCCCAAGCTAAACACTCTTAGAATTGAAGCAGACTCCATGCTGTCATTGGAGTTGAAAGGCTGCGGTGTACTATCTGAGGCATCCATCACCTGTCCT CGTTTGACTTCTCTTGATGCTTCATTTTGCAGCCAACTCAAGGATGATTGCTTGTCTGCAACTGCTGCATCCTGCCCGTTGATCGAGTCCTTAATACTCA TGTCTTGTCCTTCTGTTGGTTCTGACGGGCTTTACTCTTTGGGCCGGCTTCACCATTTGACCGTGCTGGATTTGTCCTATACCTTTTTGATGAATCTGCA GCCTGTTTTCGAGTCTTGTTTGCAGTTAAAGGTACTCCAGTTACAAGCGTGCAAATATCTGACGGACAATTCCTTAGAGCCACTGTACAAGGAAGGTGCT CTGCCTATGCTCCAAGAGTTGGATTTGTCATACGGAACACTTTGTCAGTCTGCAATAGAGGATCTTCTTGCTTGTTGTACTCACCTGACTCATTTAAGCT TGAATGGGTGTGTGAATGTGCATGACCTGAATTGGGGTTCCCACAGTGGTCAAGTGGAGGAGCTGCCAGCTATTCAAAACTCAAGTGCTTCGTTTTCACA GGAGGAGAACCATGTTGTAATCGAACATCCGAATCGTCTGCTGCAGAACCTCACTTGTGTTGGTTGTCCCAACATTAGAAAAGTTGTTATGCCCCCAACG GCACAATGCTCTCATCTGTCATCCCTTAACCTTTCTTTATCTACCAATTTGAAGGAAGTTGATATCTCGTGTTTTAACTTAGTCTTCCTCAATTTAAGCA ATTGTTACTCTTTGGTGATACTGAAGTTGAGGTGCCCCCGATTGACAAGTTTATTTCTGCAGTCATGCAGCATCAATGAAGAAGCAGTTGAAGCTGCAAT ATTCGAATGTAACATGCTTGAAACTCTTGATGTACGCTTTTGTCCAAAGATATACTCAATAAGCATGGGGAGGTTACGAGCAGCCTGCCCAAGTCTGAAG CGCGTCTTCAGCAGCCTGCTGTCGGCTTCTTGA
AA sequence Show only first row Show all	>Lus10026472 pacid=23176432 polypeptide=Lus10026472 locus=Lus10026472.g ID=Lus10026472.BGIv1.0 annot-version=v1.0 MKIWRCLCFIFDDDEEVQLLDSKNINCGAMIEPALEDEANSITMEDAEESALPFCNVNQENDNRLFEEMIRAAQGRDAAGADADGVAVPVALRRSTLRFA QRLRGESSNSSMTELPDDGIEDSDRDLHNKRAKVFTASRDCDYATMMPSSGHASSSGPKDTNFSQTPDRGEIVYHNFMWNDNSDEGCFGSNGKGGDGNGD ETAPDLEVRMDLSDDLLHMVFSFMDHVDLCRAAMVCKQWRIASAHEEFWRCLNFENRNVSVEQFEDMCRRYPNATEVNLHGAPSIHYLVMKAVSSLRNLE TLALGRGQLGDSFFHALADCNMLRSLNVNDATLGNGMQEISISHDRLQHLQLIKCRVLRISVRCPELQTLSLKRSNMGQAVLNCPLLRVLDLGSCHKLSD AAIRSAAISCPQLESLDMSNCSCVSDETLREIATTCANLHILDASYCPNISLESVRLPMLTELRLHSCEGITSASMSAISLSSMLEVLELNNCNLLTSVS LDLPRLRNISLVHCRKFVDLSLRSATLSSIVVSNCPSLHRISITSNSLKKLALLRQENLTTLVLECQCLQEVDLTDCESLTNSICEVFSDGGGCPMLRSL ILDNCESLTAVRFCSTSLLSLSLVGCRALTFLDLTTPFLEKVCLDGCDHLENASFWPVSLRSLNLGICPKLNTLRIEADSMLSLELKGCGVLSEASITCP RLTSLDASFCSQLKDDCLSATAASCPLIESLILMSCPSVGSDGLYSLGRLHHLTVLDLSYTFLMNLQPVFESCLQLKVLQLQACKYLTDNSLEPLYKEGA LPMLQELDLSYGTLCQSAIEDLLACCTHLTHLSLNGCVNVHDLNWGSHSGQVEELPAIQNSSASFSQEENHVVIEHPNRLLQNLTCVGCPNIRKVVMPPT AQCSHLSSLNLSLSTNLKEVDISCFNLVFLNLSNCYSLVILKLRCPRLTSLFLQSCSINEEAVEAAIFECNMLETLDVRFCPKIYSISMGRLRAACPSLK RVFSSLLSAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33210		SLOMO	SLOW MOTION, F-box family prot...		Lus10026472 [exp]	0	1
AT4G33210		SLOMO	SLOW MOTION, F-box family prot...		Lus10038067 [exp]	1.0	0.9324
AT2G46020		CHA2, ATBRM, CH...	CHROMATIN REMODELING 2, ARABID...		Lus10036371 [exp]	2.8	0.9185
AT5G60170			RNA binding (RRM/RBD/RNP motif...		Lus10036138 [exp]	2.8	0.9092
AT2G44900		ARABIDILLO-1, A...	F-box Armadillo protein 1, ARA...		Lus10028197 [exp]	3.9	0.9170
AT3G62900			CW-type Zinc Finger (.1)		Lus10009815 [exp]	4.9	0.9186
AT2G47390			Prolyl oligopeptidase family p...		Lus10025026 [exp]	6.5	0.8711
AT5G16280			Tetratricopeptide repeat (TPR)...		Lus10013588 [exp]	6.6	0.9040
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Lus10038363 [exp]	7.9	0.9245
AT2G33540		CPL3, ATCPL3	C-terminal domain phosphatase-...		Lus10036271 [exp]	9.5	0.9166
AT1G72390			unknown protein		Lus10013169 [exp]	9.6	0.8904

Compare expression of checked genes

Lus10026472 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.